LICENSE
README.md
pyproject.toml
requirements-prod.txt
digitaltwins/__init__.py
digitaltwins/__version__.py
digitaltwins.egg-info/PKG-INFO
digitaltwins.egg-info/SOURCES.txt
digitaltwins.egg-info/dependency_links.txt
digitaltwins.egg-info/requires.txt
digitaltwins.egg-info/top_level.txt
digitaltwins/airflow/__init__.py
digitaltwins/airflow/workflow.py
digitaltwins/core/__init__.py
digitaltwins/core/connection.py
digitaltwins/core/dataset.py
digitaltwins/core/deleter.py
digitaltwins/core/downloader.py
digitaltwins/core/querier.py
digitaltwins/core/querier_factory.py
digitaltwins/core/uploader.py
digitaltwins/core/uploader_gen3.py
digitaltwins/core/workflow.py
digitaltwins/gen3/__init__.py
digitaltwins/gen3/auth.py
digitaltwins/gen3/metadata_convertor.py
digitaltwins/gen3/metadata_exporter.py
digitaltwins/gen3/metadata_uploader.py
digitaltwins/gen3/querier.py
digitaltwins/irods/__init__.py
digitaltwins/irods/downloader.py
digitaltwins/irods/irods.py
digitaltwins/irods/querier.py
digitaltwins/irods/uploader.py
digitaltwins/metadata/__init__.py
digitaltwins/metadata/exporter.py
digitaltwins/metadata/metadata_convertor.py
digitaltwins/metadata/querier-backup.py
digitaltwins/metadata/querier.py
digitaltwins/metadata/uploader.py
digitaltwins/postgres/__init__.py
digitaltwins/postgres/converter.py
digitaltwins/postgres/exporter.py
digitaltwins/postgres/querier.py
digitaltwins/postgres/uploader.py
digitaltwins/resources/version_1_2_3/element_mapping.xlsx
digitaltwins/resources/version_2_0_0/element_mapping.xlsx
digitaltwins/resources/version_2_0_0/sds_dictionary/README.md
digitaltwins/resources/version_2_0_0/sds_dictionary/_definitions.yaml
digitaltwins/resources/version_2_0_0/sds_dictionary/_settings.yaml
digitaltwins/resources/version_2_0_0/sds_dictionary/_terms.yaml
digitaltwins/resources/version_2_0_0/sds_dictionary/aliquot.yaml
digitaltwins/resources/version_2_0_0/sds_dictionary/case.yaml
digitaltwins/resources/version_2_0_0/sds_dictionary/code_description.yaml
digitaltwins/resources/version_2_0_0/sds_dictionary/code_parameter.yaml
digitaltwins/resources/version_2_0_0/sds_dictionary/core_metadata_collection.yaml
digitaltwins/resources/version_2_0_0/sds_dictionary/dataset_description.yaml
digitaltwins/resources/version_2_0_0/sds_dictionary/experiment.yaml
digitaltwins/resources/version_2_0_0/sds_dictionary/experimental_metadata.yaml
digitaltwins/resources/version_2_0_0/sds_dictionary/manifest.yaml
digitaltwins/resources/version_2_0_0/sds_dictionary/performance.yaml
digitaltwins/resources/version_2_0_0/sds_dictionary/program.yaml
digitaltwins/resources/version_2_0_0/sds_dictionary/project.yaml
digitaltwins/resources/version_2_0_0/sds_dictionary/resource.yaml
digitaltwins/resources/version_2_0_0/sds_dictionary/sample.yaml
digitaltwins/resources/version_2_0_0/sds_dictionary/slide.yaml
digitaltwins/resources/version_2_0_0/sds_dictionary/slide_count.yaml
digitaltwins/resources/version_2_0_0/sds_dictionary/slide_image.yaml
digitaltwins/resources/version_2_0_0/sds_dictionary/submission.yaml
digitaltwins/seek/__init__.py
digitaltwins/seek/querier.py
digitaltwins/utils/__init__.py
digitaltwins/utils/config_loader.py
docs/source/conf.py
examples/delete_dataset.py
examples/download_dataset.py
examples/export_metadata.py
examples/generate_derived_dataset.py
examples/generate_primary_dataset.py
examples/generate_primary_dataset_template.py
examples/query.py
examples/query_metadata.py
examples/query_postgres.py
examples/run_workflow.py
examples/upload_assay.py
examples/upload_dataset.py
examples/gen3/convert_metadata.py
examples/gen3/submit_metadata.py
examples/irods/download_data.py
examples/workflow/example_workflow.py
examples/workflow/scripts/pretend_import.py
examples/workflow/scripts/pretend_segment.py
my_workspace/convert_metadata.py
my_workspace/download_assay_inputs.py
my_workspace/download_dataset.py
my_workspace/irods_upload.py
my_workspace/query-public-demo.py
my_workspace/query.py
my_workspace/query_factory.py
my_workspace/query_ldh.py
my_workspace/run_workflow.py
my_workspace/upload.py
my_workspace/airflow/connections.py
my_workspace/airflow/my_dag.py
my_workspace/airflow/my_dag_1.py
my_workspace/airflow/view_dags.py
my_workspace/airflow/docker/dags/example_step_1.py
my_workspace/airflow/docker/dags/example_step_2.py
my_workspace/airflow/docker/dags/example_workflow.py
my_workspace/airflow/docker/dags/my_example_dag.py
my_workspace/airflow/generic_dag/preprocessor/download_data_pre.py
my_workspace/airflow/generic_dag/preprocessor/initialise_dataset.py
my_workspace/airflow/generic_dag/preprocessor/preprocessor.py
my_workspace/airflow/generic_dag/preprocessor/workflow_preprocessor.py
my_workspace/ep1/datasets/workflow_datasets/tmp2341/code/ep1_centreline_annotation.py
my_workspace/ep1/datasets/workflow_datasets/tmp2341/code/ep1_convert_ex_to_ip_ex2ip.py
my_workspace/ep1/datasets/workflow_datasets/tmp2341/code/ep1_create_seed_points.py
my_workspace/ep1/datasets/workflow_datasets/tmp2341/code/ep1_download_data.py
my_workspace/ep1/datasets/workflow_datasets/tmp2341/code/ep1_grow_into_clusters.py
my_workspace/ep1/datasets/workflow_datasets/tmp2341/code/ep1_intensity_mapping_and_clustering.py
my_workspace/ep1/datasets/workflow_datasets/tmp2341/code/ep1_workflow_generate_personalised_anatomical_model_of_lung.py
my_workspace/ep1/preprocessor/ep1_download_data_pre.py
my_workspace/ep1/preprocessor/ep1_workflow_preprocessor.py
my_workspace/ep1/workflow_1_generate_personalised_anatomical_model_of_lung/ep1_centreline_annotation.py
my_workspace/ep1/workflow_1_generate_personalised_anatomical_model_of_lung/ep1_convert_ex_to_ip_ex2ip.py
my_workspace/ep1/workflow_1_generate_personalised_anatomical_model_of_lung/ep1_create_seed_points.py
my_workspace/ep1/workflow_1_generate_personalised_anatomical_model_of_lung/ep1_download_data.py
my_workspace/ep1/workflow_1_generate_personalised_anatomical_model_of_lung/ep1_grow_into_clusters.py
my_workspace/ep1/workflow_1_generate_personalised_anatomical_model_of_lung/ep1_intensity_mapping_and_clustering.py
my_workspace/ep1/workflow_1_generate_personalised_anatomical_model_of_lung/ep1_workflow_generate_personalised_anatomical_model_of_lung.py
my_workspace/ep2/code/Merge_FittedMesh.py
my_workspace/ep2/code/rbf.py
my_workspace/ep2/preprocessor/ep2_download_data_pre.py
my_workspace/ep2/preprocessor/ep2_workflow_preprocessor.py
my_workspace/ep2/workflow_1_generate_personalised_model/ep2_pretend_add_to_dataset.py
my_workspace/ep2/workflow_1_generate_personalised_model/ep2_pretend_download_data.py
my_workspace/ep2/workflow_1_generate_personalised_model/ep2_pretend_join_sternum_and_ribs.py
my_workspace/ep2/workflow_1_generate_personalised_model/ep2_pretend_mesh_fitting.py
my_workspace/ep2/workflow_1_generate_personalised_model/ep2_pretend_workflow_generate_personalised_model.py
my_workspace/ep3/jupyter/jupyter_lab_config.py
my_workspace/ep3/jupyter/jupyter_lab_config_token.py
my_workspace/ep3/preprocessor/ep3_download_data_pre.py
my_workspace/ep3/preprocessor/ep3_workflow_preprocessor.py
my_workspace/ep3/preprocessor/initialise_dataset.py
my_workspace/ep4/generate_primary_dataset_ep4.py
my_workspace/ep4/airflow/run_sam/create_derived_sds.py
my_workspace/ep4/airflow/run_sam/create_nifti.py
my_workspace/ep4/airflow/run_sam/ep4.py
my_workspace/ep4/airflow/run_sam/run_sample.py
my_workspace/ep4/airflow/run_sam/run_samples.py
my_workspace/ep4/airflow/run_sam/segment.py
my_workspace/ep4/airflow/run_sam/trigger.py
my_workspace/ep4/airflow/run_sds/create_nifti.py
my_workspace/ep4/airflow/run_sds/ep4.py
my_workspace/ep4/airflow/run_sds/segment.py
my_workspace/ep4/datasets/tool_datasets/69cfadbc-5f52-11ef-917d-484d7e9beb16/code/dicom_to_nifti.py
my_workspace/ep4/preprocessor/download_data_pre.py
my_workspace/ep4/preprocessor/initialise_dataset.py
my_workspace/ep4/preprocessor/preprocessor.py
my_workspace/ep4/preprocessor/workflow_preprocessor.py
my_workspace/ep4/public_demo/ep4_automated_torso_model_generation.py
my_workspace/ep4/workflow_model_generation/create_nifti.py
my_workspace/ep4/workflow_model_generation/download_data.py
my_workspace/ep4/workflow_model_generation/pretend_add_to_dataset.py
my_workspace/ep4/workflow_model_generation/pretend_create_mesh.py
my_workspace/ep4/workflow_model_generation/pretend_create_nifti.py
my_workspace/ep4/workflow_model_generation/pretend_create_point_cloud.py
my_workspace/ep4/workflow_model_generation/pretend_download_data.py
my_workspace/ep4/workflow_model_generation/pretend_segment.py
my_workspace/ep4/workflow_model_generation/pretend_workflow_model_generation.py
my_workspace/ep4/workflow_model_generation/segment.py
my_workspace/postgres/connect_postgres.py
my_workspace/postgres/convert.py
my_workspace/postgres/export.py
my_workspace/postgres/query.py
my_workspace/postgres/query_mapping.py
my_workspace/postgres/query_test.py
my_workspace/postgres/upload.py
my_workspace/tmp/6ba38e34-ee5d-11ef-917d-484d7e9beb16/code/dicom_to_nifti.py
my_workspace/tmp/6ba38e34-ee5d-11ef-917d-484d7e9beb16/code/import_scan.py
my_workspace/tmp/6ba38e34-ee5d-11ef-917d-484d7e9beb16/code/segment.py
my_workspace/tmp/d15dbdd2-ed7a-11ef-917d-484d7e9beb16/primary/dicom_to_nifti.py
my_workspace/tmp/d15dbdd2-ed7a-11ef-917d-484d7e9beb16/primary/generate_mesh_cl.py
my_workspace/tmp/d15dbdd2-ed7a-11ef-917d-484d7e9beb16/primary/generate_point_cloud.py
my_workspace/tmp/d15dbdd2-ed7a-11ef-917d-484d7e9beb16/primary/segment.py
venv_310_airflow/bin/jp.py
venv_310_airflow/bin/rst2html.py
venv_310_airflow/bin/rst2html4.py
venv_310_airflow/bin/rst2html5.py
venv_310_airflow/bin/rst2latex.py
venv_310_airflow/bin/rst2man.py
venv_310_airflow/bin/rst2odt.py
venv_310_airflow/bin/rst2odt_prepstyles.py
venv_310_airflow/bin/rst2pseudoxml.py
venv_310_airflow/bin/rst2s5.py
venv_310_airflow/bin/rst2xetex.py
venv_310_airflow/bin/rst2xml.py
venv_310_airflow/bin/rstpep2html.py
venv_310_airflow/bin/runxlrd.py
venv_311_dev/bin/activate_this.py
venv_311_dev/bin/publish.py
venv_38_airflow/bin/fixup_bigtable_admin_v2_keywords.py
venv_38_airflow/bin/fixup_bigtable_v2_keywords.py
venv_38_airflow/bin/fixup_pubsub_v1_keywords.py
venv_38_airflow/bin/jp.py
venv_38_airflow/bin/runxlrd.py
venv_38_airflow_new/bin/jp.py
venv_38_airflow_new/bin/runxlrd.py
venv_38_dev/bin/activate_this.py
venv_39_dev/bin/activate_this.py
venv_39_dev/bin/jp.py
venv_39_dev/bin/publish.py
venv_39_dev/bin/rst2html.py
venv_39_dev/bin/rst2html4.py
venv_39_dev/bin/rst2html5.py
venv_39_dev/bin/rst2latex.py
venv_39_dev/bin/rst2man.py
venv_39_dev/bin/rst2odt.py
venv_39_dev/bin/rst2odt_prepstyles.py
venv_39_dev/bin/rst2pseudoxml.py
venv_39_dev/bin/rst2s5.py
venv_39_dev/bin/rst2xetex.py
venv_39_dev/bin/rst2xml.py
venv_39_dev/bin/rstpep2html.py
venv_39_dev/bin/runxlrd.py