.auto-changelog
.auto-changelog-template.hbs
.codespellrc
.gitignore
.readthedocs.yml
AUTHORS.md
CHANGELOG.md
CITATION.cff
CONTRIBUTING.md
LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
setup.py
tox.ini
.github/workflows/publish-sdist.yml
.github/workflows/run-tox.yml
diameter_synthesis/__init__.py
diameter_synthesis/build_diameters.py
diameter_synthesis/build_models.py
diameter_synthesis/cli.py
diameter_synthesis/distribution_fitting.py
diameter_synthesis/exception.py
diameter_synthesis/main.py
diameter_synthesis/morph_functions.py
diameter_synthesis/plotting.py
diameter_synthesis/utils.py
diameter_synthesis/validators.py
diameter_synthesis.egg-info/PKG-INFO
diameter_synthesis.egg-info/SOURCES.txt
diameter_synthesis.egg-info/dependency_links.txt
diameter_synthesis.egg-info/entry_points.txt
diameter_synthesis.egg-info/requires.txt
diameter_synthesis.egg-info/top_level.txt
diameter_synthesis/schemas/config.json
diameter_synthesis/schemas/model_params.json
doc/Makefile
doc/source/api.rst
doc/source/changelog.rst
doc/source/cli.rst
doc/source/conf.py
doc/source/contributing.rst
doc/source/index.rst
doc/source/params_and_distrs.rst
examples/diametrizer_config.json
examples/get_morphologies.py
examples/model_config.json
examples/run.sh
tests/__init__.py
tests/conftest.py
tests/test_build_diameters.py
tests/test_build_models.py
tests/test_distribution_fitting.py
tests/test_main_and_cli.py
tests/test_morph_functions.py
tests/test_plotting.py
tests/test_validator.py
tests/testing_tools.py
tests/data/C030796A-P3.h5
tests/data/C030796A-P3_diametrized.h5
tests/data/C030796A-P3_lite.h5
tests/data/C030796A-P3_lite_diametrized.h5
tests/data/C030796A-P3_lite_diametrized_1_sample.h5
tests/data/C030796A-P3_lite_diametrized_astrocyte.h5
tests/data/config.json
tests/data/model_data.json
tests/data/model_params.json
tests/data/neurondb.dat
tests/expected_images/test_plot_cumulative_distribution.pdf
tests/expected_images/test_plot_diameter_diff_div.pdf
tests/expected_images/test_plot_diameter_diff_mult.pdf
tests/expected_images/test_plot_distribution_fit.pdf
tests/expected_images/test_plot_distribution_fit_scatter.pdf
tests/expected_images/test_violin_analysis.pdf
tests/expected_images/test_cumulative_analysis/analysis/L5_TPC_A_cumulative_section_path_distances_areas.pdf
tests/expected_images/test_cumulative_analysis/analysis/L5_TPC_A_cumulative_section_path_distances_volumes.pdf
tests/expected_images/test_cumulative_analysis/analysis/L5_TPC_A_cumulative_section_path_distances_areas_individual/0_L5_TPC_A_cumulative_section_path_distances_areas_C030796A-P3_lite.pdf
tests/expected_images/test_cumulative_analysis/analysis/L5_TPC_A_cumulative_section_path_distances_volumes_individual/0_L5_TPC_A_cumulative_section_path_distances_volumes_C030796A-P3_lite.pdf
tests/expected_images/test_make_cumulative_figures/cumulative_segment_radial_distances_volumes.pdf
tests/expected_images/test_make_cumulative_figures/cumulative_segment_radial_distances_volumes_individual/0_cumulative_segment_radial_distances_volumes.pdf