2012-11-19 13:28:00,933 - dexy - DEBUG - looking for doc config files in '.'
2012-11-19 13:28:00,934 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-19 13:28:00,934 - dexy - DEBUG -   skipping directory './artifacts' because it matches exclude 'artifacts'
2012-11-19 13:28:00,934 - dexy - DEBUG -   skipping directory './logs' because it matches exclude 'logs'
2012-11-19 13:28:00,934 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-19 13:28:00,934 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-19 13:28:00,934 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-19 13:28:00,934 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-19 13:28:00,934 - dexy - DEBUG - found doc config file './dexy.yaml':
code:
    - .R|rout

.md|jinja|pandoc:
    - code

.md|jinja|pandoc|-odt:
    - pandoc: { ext : .odt }
    - code

.md|jinja|pandoc|-pdf:
    - pandoc: { ext : .pdf }
    - code

.md|jinja|pandoc|-docx:
    - pandoc: { ext : .docx, args: '--toc' }
    - code

2012-11-19 13:28:00,937 - dexy - DEBUG - adding task info for 'pattern:*.md|jinja|pandoc|-odt'
2012-11-19 13:28:00,937 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc|-odt'
2012-11-19 13:28:00,937 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc'
2012-11-19 13:28:00,937 - dexy - DEBUG - adding dependency of 'pattern:*.R|rout' on 'bundle:code'
2012-11-19 13:28:00,937 - dexy - DEBUG - adding task info for 'pattern:*.md|jinja|pandoc|-pdf'
2012-11-19 13:28:00,937 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc|-pdf'
2012-11-19 13:28:00,937 - dexy - DEBUG - adding task info for 'pattern:*.md|jinja|pandoc|-docx'
2012-11-19 13:28:00,937 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc|-docx'
2012-11-19 13:28:00,937 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-19 13:28:00,937 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-19 13:28:00,938 - dexy - DEBUG - AST completed:
2012-11-19 13:28:00,938 - dexy - DEBUG - tree:
2012-11-19 13:28:00,938 - dexy - DEBUG -   pattern:*.md|jinja|pandoc|-odt
2012-11-19 13:28:00,938 - dexy - DEBUG -   pattern:*.md|jinja|pandoc
2012-11-19 13:28:00,938 - dexy - DEBUG -   pattern:*.md|jinja|pandoc|-pdf
2012-11-19 13:28:00,938 - dexy - DEBUG -   pattern:*.md|jinja|pandoc|-docx
2012-11-19 13:28:00,938 - dexy - DEBUG - lookup table:
2012-11-19 13:28:00,938 - dexy - DEBUG -   pattern:*.md|jinja|pandoc|-docx: {'children': ['bundle:code'], 'pandoc': {'ext': '.docx', 'args': '--toc'}}
2012-11-19 13:28:00,938 - dexy - DEBUG -   bundle:code: {'children': ['pattern:*.R|rout']}
2012-11-19 13:28:00,938 - dexy - DEBUG -   pattern:*.md|jinja|pandoc|-odt: {'children': ['bundle:code'], 'pandoc': {'ext': '.odt'}}
2012-11-19 13:28:00,938 - dexy - DEBUG -   pattern:*.md|jinja|pandoc|-pdf: {'children': ['bundle:code'], 'pandoc': {'ext': '.pdf'}}
2012-11-19 13:28:00,938 - dexy - DEBUG -   pattern:*.md|jinja|pandoc: {'children': ['bundle:code']}
2012-11-19 13:28:00,938 - dexy - DEBUG -   pattern:*.R|rout: {'children': []}
2012-11-19 13:28:00,938 - dexy - DEBUG - walking AST:
2012-11-19 13:28:00,938 - dexy - DEBUG - Creating task 'pattern:*.R|rout' with children '()' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x39fff90>}'
2012-11-19 13:28:00,938 - dexy - DEBUG - Creating task 'bundle:code' with children '(PatternDoc:*.R|rout,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x39fff90>}'
2012-11-19 13:28:00,938 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc|-odt' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x39fff90>, 'pandoc': {'ext': '.odt'}}'
2012-11-19 13:28:00,938 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x39fff90>}'
2012-11-19 13:28:00,939 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc|-pdf' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x39fff90>, 'pandoc': {'ext': '.pdf'}}'
2012-11-19 13:28:00,939 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc|-docx' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x39fff90>, 'pandoc': {'ext': '.docx', 'args': '--toc'}}'
2012-11-19 13:28:01,133 - dexy - DEBUG - batch id is 1001
2012-11-19 13:28:01,133 - dexy - DEBUG - running dexy with config:
2012-11-19 13:28:01,134 - dexy - DEBUG -   artifacts_dir: artifacts
2012-11-19 13:28:01,134 - dexy - DEBUG -   batch_id: 1001
2012-11-19 13:28:01,134 - dexy - DEBUG -   batch_info: {'start_time': 1353360480.939215}
2012-11-19 13:28:01,134 - dexy - DEBUG -   config_file: dexy.conf
2012-11-19 13:28:01,134 - dexy - DEBUG -   danger: False
2012-11-19 13:28:01,134 - dexy - DEBUG -   db_alias: sqlite3
2012-11-19 13:28:01,134 - dexy - DEBUG -   db_file: dexy.sqlite3
2012-11-19 13:28:01,134 - dexy - DEBUG -   disable_tests: False
2012-11-19 13:28:01,134 - dexy - DEBUG -   doc_config: OrderedDict([('.', "code:\n    - .R|rout\n\n.md|jinja|pandoc:\n    - code\n\n.md|jinja|pandoc|-odt:\n    - pandoc: { ext : .odt }\n    - code\n\n.md|jinja|pandoc|-pdf:\n    - pandoc: { ext : .pdf }\n    - code\n\n.md|jinja|pandoc|-docx:\n    - pandoc: { ext : .docx, args: '--toc' }\n    - code\n")])
2012-11-19 13:28:01,134 - dexy - DEBUG -   dont_use_cache: False
2012-11-19 13:28:01,135 - dexy - DEBUG -   dry_run: False
2012-11-19 13:28:01,135 - dexy - DEBUG -   exclude: .git, .svn, tmp, cache
2012-11-19 13:28:01,135 - dexy - DEBUG -   exclude_also: 
2012-11-19 13:28:01,135 - dexy - DEBUG -   globals: 
2012-11-19 13:28:01,135 - dexy - DEBUG -   hashfunction: md5
2012-11-19 13:28:01,135 - dexy - DEBUG -   ignore_nonzero_exit: False
2012-11-19 13:28:01,135 - dexy - DEBUG -   log_dir: logs
2012-11-19 13:28:01,135 - dexy - DEBUG -   log_file: dexy.log
2012-11-19 13:28:01,135 - dexy - DEBUG -   log_format: %(asctime)s - %(name)s - %(levelname)s - %(message)s
2012-11-19 13:28:01,135 - dexy - DEBUG -   log_level: DEBUG
2012-11-19 13:28:01,135 - dexy - DEBUG -   profile: False
2012-11-19 13:28:01,135 - dexy - DEBUG -   recurse: True
2012-11-19 13:28:01,135 - dexy - DEBUG -   reports: 
2012-11-19 13:28:01,135 - dexy - DEBUG -   silent: False
2012-11-19 13:28:01,135 - dexy - DEBUG -   state: None
2012-11-19 13:28:01,135 - dexy - DEBUG -   target: False
2012-11-19 13:28:01,135 - dexy - DEBUG -   uselocals: False
2012-11-19 13:28:01,136 - *.R|rout - DEBUG - creating child of patterndoc *.R|rout: example.R|rout
2012-11-19 13:28:01,142 - *.md|jinja|pandoc|-odt - DEBUG - creating child of patterndoc *.md|jinja|pandoc|-odt: report.md|jinja|pandoc|-odt
2012-11-19 13:28:01,143 - example.R - DEBUG - Setting up InitialArtifact:example.R
2012-11-19 13:28:01,143 - example.R - DEBUG - Setting hashstring for example.R to 37efdae66ef5056d41883121456b3c86
2012-11-19 13:28:01,143 - example.R - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:01,143 - dexy - DEBUG - Creating new notification channel 'newchild'
2012-11-19 13:28:01,143 - example.R|rout - DEBUG - Setting up FilterArtifact:example.R|rout
2012-11-19 13:28:01,169 - example.R|rout - DEBUG - Setting hashstring for example.R|rout to 16229d63a9449308b5f2f45013c9b2ab
2012-11-19 13:28:01,169 - example.R|rout - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:01,171 - *.md|jinja|pandoc - DEBUG - creating child of patterndoc *.md|jinja|pandoc: report.md|jinja|pandoc
2012-11-19 13:28:01,174 - *.md|jinja|pandoc|-pdf - DEBUG - creating child of patterndoc *.md|jinja|pandoc|-pdf: report.md|jinja|pandoc|-pdf
2012-11-19 13:28:01,177 - *.md|jinja|pandoc|-docx - DEBUG - creating child of patterndoc *.md|jinja|pandoc|-docx: report.md|jinja|pandoc|-docx
2012-11-19 13:28:01,179 - report.md - DEBUG - Setting up InitialArtifact:report.md
2012-11-19 13:28:01,180 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-19 13:28:01,180 - report.md - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:01,181 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja
2012-11-19 13:28:01,183 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to 2a72b42ef21c8c1f4e0febeec01055a0
2012-11-19 13:28:01,184 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:01,185 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc
2012-11-19 13:28:01,200 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to 29996ad27404cf4801ddb34257031d71
2012-11-19 13:28:01,202 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:01,203 - report.md|jinja|pandoc|-odt - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc|-odt
2012-11-19 13:28:01,205 - report.md|jinja|pandoc|-odt - DEBUG - Setting hashstring for report.md|jinja|pandoc|-odt to 967edcbaf43c70b71d5aba20b1173d6f
2012-11-19 13:28:01,205 - report.md|jinja|pandoc|-odt - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:01,207 - report.md - DEBUG - Setting up InitialArtifact:report.md
2012-11-19 13:28:01,207 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-19 13:28:01,208 - report.md - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:01,208 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja
2012-11-19 13:28:01,211 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to 0de10b0f3ac9681f6eef299e878a1c16
2012-11-19 13:28:01,212 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:01,213 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc
2012-11-19 13:28:01,230 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to d07ecc3fda578c14aa51d97a4a9252e2
2012-11-19 13:28:01,232 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:01,233 - report.md - DEBUG - Setting up InitialArtifact:report.md
2012-11-19 13:28:01,234 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-19 13:28:01,234 - report.md - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:01,235 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja
2012-11-19 13:28:01,238 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to 999ed730dae84c7227d1fd380e280f57
2012-11-19 13:28:01,238 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:01,239 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc
2012-11-19 13:28:01,257 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to 374dafaaec8b9be60e3a3b94ce9df20c
2012-11-19 13:28:01,258 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:01,260 - report.md|jinja|pandoc|-pdf - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc|-pdf
2012-11-19 13:28:01,262 - report.md|jinja|pandoc|-pdf - DEBUG - Setting hashstring for report.md|jinja|pandoc|-pdf to 366f465f37a9d65c0bee00cd76d061df
2012-11-19 13:28:01,262 - report.md|jinja|pandoc|-pdf - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:01,263 - report.md - DEBUG - Setting up InitialArtifact:report.md
2012-11-19 13:28:01,264 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-19 13:28:01,264 - report.md - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:01,265 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja
2012-11-19 13:28:01,268 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to 679cc4370ea3018f8d90b3a36b8dc579
2012-11-19 13:28:01,268 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:01,269 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc
2012-11-19 13:28:01,284 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to c92599097f2fed1fc118e48ed95e0bd0
2012-11-19 13:28:01,286 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:01,287 - report.md|jinja|pandoc|-docx - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc|-docx
2012-11-19 13:28:01,289 - report.md|jinja|pandoc|-docx - DEBUG - Setting hashstring for report.md|jinja|pandoc|-docx to d402fc4af60607659294398faf602078
2012-11-19 13:28:01,289 - report.md|jinja|pandoc|-docx - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:01,292 - example.R|rout - DEBUG - Running FilterArtifact:example.R|rout
2012-11-19 13:28:01,292 - example.R|rout - DEBUG - Output is not cached under 16229d63a9449308b5f2f45013c9b2ab, running...
2012-11-19 13:28:01,294 - example.R|rout - DEBUG - About to run 'R CMD BATCH --vanilla --quiet --slave --no-timing  example.R  example.txt' in 'artifacts/16229d63a9449308b5f2f45013c9b2ab/'
2012-11-19 13:28:01,968 - example.R|rout - DEBUG - stdout is ''
2012-11-19 13:28:01,968 - example.R|rout - DEBUG - stderr is ''
2012-11-19 13:28:01,969 - example.R|rout - DEBUG - adding new files found in artifacts/16229d63a9449308b5f2f45013c9b2ab for example.R|rout
2012-11-19 13:28:01,969 - example.R|rout - DEBUG - adding additional doc example.txt (created by example.R|rout)
2012-11-19 13:28:01,969 - example.txt - DEBUG - Setting up InitialVirtualArtifact:example.txt
2012-11-19 13:28:01,970 - example.txt - DEBUG - Setting hashstring for example.txt to 67ca147287010eee7af5529b040a79ab
2012-11-19 13:28:01,970 - example.txt - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:01,970 - example.R|rout - DEBUG - adding additional doc plot.png (created by example.R|rout)
2012-11-19 13:28:01,971 - plot.png - DEBUG - Setting up InitialVirtualArtifact:plot.png
2012-11-19 13:28:01,971 - plot.png - DEBUG - Setting hashstring for plot.png to a4249c9911b3be397dc5ab29237545fe
2012-11-19 13:28:01,971 - plot.png - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:01,972 - example.R|rout - DEBUG - adding additional doc storage.json (created by example.R|rout)
2012-11-19 13:28:01,972 - storage.json - DEBUG - Setting up InitialVirtualArtifact:storage.json
2012-11-19 13:28:01,972 - storage.json - DEBUG - Setting hashstring for storage.json to 6248a02508321609e66ae3d947f25aaa
2012-11-19 13:28:01,972 - storage.json - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:01,973 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja
2012-11-19 13:28:01,974 - report.md|jinja - DEBUG - Output is not cached under 2a72b42ef21c8c1f4e0febeec01055a0, running...
2012-11-19 13:28:01,975 - report.md|jinja - DEBUG - setting up jinja FileSystemLoader with dirs artifacts/2a72b42ef21c8c1f4e0febeec01055a0/, artifacts/2a72b42ef21c8c1f4e0febeec01055a0
2012-11-19 13:28:01,975 - report.md|jinja - DEBUG - setting up jinja environment
2012-11-19 13:28:01,975 - report.md|jinja - DEBUG - Creating jinja2 environment with: undefined: <class 'jinja2.runtime.StrictUndefined'>, loader: <jinja2.loaders.FileSystemLoader object at 0x3a8ff50>
2012-11-19 13:28:01,975 - report.md|jinja - DEBUG - initializing template
2012-11-19 13:28:01,976 - report.md|jinja - DEBUG - Running template plugin PrettyPrintJson
2012-11-19 13:28:01,976 - report.md|jinja - DEBUG - Running template plugin PythonDatetime
2012-11-19 13:28:01,976 - report.md|jinja - DEBUG - Running template plugin DexyVersion
2012-11-19 13:28:01,976 - report.md|jinja - DEBUG - Running template plugin SimpleJson
2012-11-19 13:28:01,976 - report.md|jinja - DEBUG - Running template plugin PrettyPrinter
2012-11-19 13:28:01,977 - report.md|jinja - DEBUG - Running template plugin RegularExpressions
2012-11-19 13:28:01,977 - report.md|jinja - DEBUG - Running template plugin PythonBuiltins
2012-11-19 13:28:01,977 - report.md|jinja - DEBUG - Running template plugin PygmentsStylesheet
2012-11-19 13:28:02,004 - report.md|jinja - DEBUG - Running template plugin Subdirectories
2012-11-19 13:28:02,004 - report.md|jinja - DEBUG - Running template plugin Variables
2012-11-19 13:28:02,004 - report.md|jinja - DEBUG - Running template plugin Globals
2012-11-19 13:28:02,004 - report.md|jinja - DEBUG - Running template plugin Inputs
2012-11-19 13:28:02,005 - report.md|jinja - DEBUG - relative refs are ['/example.R-rout.txt', '/example.R|rout', '/example.txt', '/plot.png', '/storage.json', 'example.R-rout.txt', 'example.R|rout', 'example.txt', 'plot.png', 'storage.json']
2012-11-19 13:28:02,005 - report.md|jinja - DEBUG - jinja template data keys are DEXY_VERSION, a, abs, all, any, bin, bool, bytearray, cal, caldates, calendar, callable, chr, cmp, complex, d, datetime, dict, dir, divmod, enumerate, f, filter, float, format, hasattr, hex, highlight, id, int, isinstance, issubclass, iter, json, len, list, long, map, max, min, month, oct, ord, pformat, pow, ppjson, pygments, range, re_match, re_search, reduce, repr, reversed, round, s, set, slice, sorted, str, subdirectories, sum, tc, today, tuple, unicode, w, xrange, year, zip
2012-11-19 13:28:02,005 - report.md|jinja - DEBUG - about to create jinja template
2012-11-19 13:28:02,009 - report.md|jinja - DEBUG - about to process jinja template
2012-11-19 13:28:02,010 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc
2012-11-19 13:28:02,010 - report.md|jinja|pandoc - DEBUG - Output is not cached under 29996ad27404cf4801ddb34257031d71, running...
2012-11-19 13:28:02,011 - report.md|jinja|pandoc - DEBUG - About to run 'pandoc  report.md -o report.odt' in 'artifacts/29996ad27404cf4801ddb34257031d71/'
2012-11-19 13:28:02,167 - report.md|jinja|pandoc - DEBUG - stdout is ''
2012-11-19 13:28:02,169 - report.md|jinja|pandoc - DEBUG - stderr is ''
2012-11-19 13:28:02,172 - report.md|jinja|pandoc|-odt - DEBUG - Running FilterArtifact:report.md|jinja|pandoc|-odt
2012-11-19 13:28:02,172 - report.md|jinja|pandoc|-odt - DEBUG - Output is not cached under 967edcbaf43c70b71d5aba20b1173d6f, running...
2012-11-19 13:28:02,175 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja
2012-11-19 13:28:02,176 - report.md|jinja - DEBUG - Output is not cached under 0de10b0f3ac9681f6eef299e878a1c16, running...
2012-11-19 13:28:02,180 - report.md|jinja - DEBUG - setting up jinja FileSystemLoader with dirs artifacts/0de10b0f3ac9681f6eef299e878a1c16/, artifacts/0de10b0f3ac9681f6eef299e878a1c16
2012-11-19 13:28:02,181 - report.md|jinja - DEBUG - setting up jinja environment
2012-11-19 13:28:02,182 - report.md|jinja - DEBUG - Creating jinja2 environment with: undefined: <class 'jinja2.runtime.StrictUndefined'>, loader: <jinja2.loaders.FileSystemLoader object at 0x3a9cc90>
2012-11-19 13:28:02,183 - report.md|jinja - DEBUG - initializing template
2012-11-19 13:28:02,183 - report.md|jinja - DEBUG - Running template plugin PrettyPrintJson
2012-11-19 13:28:02,183 - report.md|jinja - DEBUG - Running template plugin PythonDatetime
2012-11-19 13:28:02,183 - report.md|jinja - DEBUG - Running template plugin DexyVersion
2012-11-19 13:28:02,183 - report.md|jinja - DEBUG - Running template plugin SimpleJson
2012-11-19 13:28:02,184 - report.md|jinja - DEBUG - Running template plugin PrettyPrinter
2012-11-19 13:28:02,184 - report.md|jinja - DEBUG - Running template plugin RegularExpressions
2012-11-19 13:28:02,184 - report.md|jinja - DEBUG - Running template plugin PythonBuiltins
2012-11-19 13:28:02,184 - report.md|jinja - DEBUG - Running template plugin PygmentsStylesheet
2012-11-19 13:28:02,201 - report.md|jinja - DEBUG - Running template plugin Subdirectories
2012-11-19 13:28:02,201 - report.md|jinja - DEBUG - Running template plugin Variables
2012-11-19 13:28:02,202 - report.md|jinja - DEBUG - Running template plugin Globals
2012-11-19 13:28:02,202 - report.md|jinja - DEBUG - Running template plugin Inputs
2012-11-19 13:28:02,202 - report.md|jinja - DEBUG - relative refs are ['/example.R-rout.txt', '/example.R|rout', '/example.txt', '/plot.png', '/storage.json', 'example.R-rout.txt', 'example.R|rout', 'example.txt', 'plot.png', 'storage.json']
2012-11-19 13:28:02,202 - report.md|jinja - DEBUG - jinja template data keys are DEXY_VERSION, a, abs, all, any, bin, bool, bytearray, cal, caldates, calendar, callable, chr, cmp, complex, d, datetime, dict, dir, divmod, enumerate, f, filter, float, format, hasattr, hex, highlight, id, int, isinstance, issubclass, iter, json, len, list, long, map, max, min, month, oct, ord, pformat, pow, ppjson, pygments, range, re_match, re_search, reduce, repr, reversed, round, s, set, slice, sorted, str, subdirectories, sum, tc, today, tuple, unicode, w, xrange, year, zip
2012-11-19 13:28:02,203 - report.md|jinja - DEBUG - about to create jinja template
2012-11-19 13:28:02,204 - report.md|jinja - DEBUG - about to process jinja template
2012-11-19 13:28:02,205 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc
2012-11-19 13:28:02,205 - report.md|jinja|pandoc - DEBUG - Output is not cached under d07ecc3fda578c14aa51d97a4a9252e2, running...
2012-11-19 13:28:02,207 - report.md|jinja|pandoc - DEBUG - About to run 'pandoc  report.md -o report.html' in 'artifacts/d07ecc3fda578c14aa51d97a4a9252e2/'
2012-11-19 13:28:02,254 - report.md|jinja|pandoc - DEBUG - stdout is ''
2012-11-19 13:28:02,255 - report.md|jinja|pandoc - DEBUG - stderr is ''
2012-11-19 13:28:02,260 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja
2012-11-19 13:28:02,261 - report.md|jinja - DEBUG - Output is not cached under 999ed730dae84c7227d1fd380e280f57, running...
2012-11-19 13:28:02,265 - report.md|jinja - DEBUG - setting up jinja FileSystemLoader with dirs artifacts/999ed730dae84c7227d1fd380e280f57/, artifacts/999ed730dae84c7227d1fd380e280f57
2012-11-19 13:28:02,266 - report.md|jinja - DEBUG - setting up jinja environment
2012-11-19 13:28:02,266 - report.md|jinja - DEBUG - Creating jinja2 environment with: undefined: <class 'jinja2.runtime.StrictUndefined'>, loader: <jinja2.loaders.FileSystemLoader object at 0x3a9ce10>
2012-11-19 13:28:02,267 - report.md|jinja - DEBUG - initializing template
2012-11-19 13:28:02,267 - report.md|jinja - DEBUG - Running template plugin PrettyPrintJson
2012-11-19 13:28:02,267 - report.md|jinja - DEBUG - Running template plugin PythonDatetime
2012-11-19 13:28:02,267 - report.md|jinja - DEBUG - Running template plugin DexyVersion
2012-11-19 13:28:02,268 - report.md|jinja - DEBUG - Running template plugin SimpleJson
2012-11-19 13:28:02,268 - report.md|jinja - DEBUG - Running template plugin PrettyPrinter
2012-11-19 13:28:02,268 - report.md|jinja - DEBUG - Running template plugin RegularExpressions
2012-11-19 13:28:02,268 - report.md|jinja - DEBUG - Running template plugin PythonBuiltins
2012-11-19 13:28:02,268 - report.md|jinja - DEBUG - Running template plugin PygmentsStylesheet
2012-11-19 13:28:02,285 - report.md|jinja - DEBUG - Running template plugin Subdirectories
2012-11-19 13:28:02,285 - report.md|jinja - DEBUG - Running template plugin Variables
2012-11-19 13:28:02,286 - report.md|jinja - DEBUG - Running template plugin Globals
2012-11-19 13:28:02,286 - report.md|jinja - DEBUG - Running template plugin Inputs
2012-11-19 13:28:02,286 - report.md|jinja - DEBUG - relative refs are ['/example.R-rout.txt', '/example.R|rout', '/example.txt', '/plot.png', '/storage.json', 'example.R-rout.txt', 'example.R|rout', 'example.txt', 'plot.png', 'storage.json']
2012-11-19 13:28:02,286 - report.md|jinja - DEBUG - jinja template data keys are DEXY_VERSION, a, abs, all, any, bin, bool, bytearray, cal, caldates, calendar, callable, chr, cmp, complex, d, datetime, dict, dir, divmod, enumerate, f, filter, float, format, hasattr, hex, highlight, id, int, isinstance, issubclass, iter, json, len, list, long, map, max, min, month, oct, ord, pformat, pow, ppjson, pygments, range, re_match, re_search, reduce, repr, reversed, round, s, set, slice, sorted, str, subdirectories, sum, tc, today, tuple, unicode, w, xrange, year, zip
2012-11-19 13:28:02,287 - report.md|jinja - DEBUG - about to create jinja template
2012-11-19 13:28:02,288 - report.md|jinja - DEBUG - about to process jinja template
2012-11-19 13:28:02,289 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc
2012-11-19 13:28:02,289 - report.md|jinja|pandoc - DEBUG - Output is not cached under 374dafaaec8b9be60e3a3b94ce9df20c, running...
2012-11-19 13:28:02,291 - report.md|jinja|pandoc - DEBUG - About to run 'pandoc  report.md -o report.pdf' in 'artifacts/374dafaaec8b9be60e3a3b94ce9df20c/'
2012-11-19 13:28:03,173 - report.md|jinja|pandoc - DEBUG - stdout is ''
2012-11-19 13:28:03,174 - report.md|jinja|pandoc - DEBUG - stderr is ''
2012-11-19 13:28:03,177 - report.md|jinja|pandoc|-pdf - DEBUG - Running FilterArtifact:report.md|jinja|pandoc|-pdf
2012-11-19 13:28:03,178 - report.md|jinja|pandoc|-pdf - DEBUG - Output is not cached under 366f465f37a9d65c0bee00cd76d061df, running...
2012-11-19 13:28:03,179 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja
2012-11-19 13:28:03,180 - report.md|jinja - DEBUG - Output is not cached under 679cc4370ea3018f8d90b3a36b8dc579, running...
2012-11-19 13:28:03,180 - report.md|jinja - DEBUG - setting up jinja FileSystemLoader with dirs artifacts/679cc4370ea3018f8d90b3a36b8dc579/, artifacts/679cc4370ea3018f8d90b3a36b8dc579
2012-11-19 13:28:03,181 - report.md|jinja - DEBUG - setting up jinja environment
2012-11-19 13:28:03,181 - report.md|jinja - DEBUG - Creating jinja2 environment with: undefined: <class 'jinja2.runtime.StrictUndefined'>, loader: <jinja2.loaders.FileSystemLoader object at 0x3bbacd0>
2012-11-19 13:28:03,181 - report.md|jinja - DEBUG - initializing template
2012-11-19 13:28:03,181 - report.md|jinja - DEBUG - Running template plugin PrettyPrintJson
2012-11-19 13:28:03,182 - report.md|jinja - DEBUG - Running template plugin PythonDatetime
2012-11-19 13:28:03,182 - report.md|jinja - DEBUG - Running template plugin DexyVersion
2012-11-19 13:28:03,182 - report.md|jinja - DEBUG - Running template plugin SimpleJson
2012-11-19 13:28:03,182 - report.md|jinja - DEBUG - Running template plugin PrettyPrinter
2012-11-19 13:28:03,182 - report.md|jinja - DEBUG - Running template plugin RegularExpressions
2012-11-19 13:28:03,183 - report.md|jinja - DEBUG - Running template plugin PythonBuiltins
2012-11-19 13:28:03,183 - report.md|jinja - DEBUG - Running template plugin PygmentsStylesheet
2012-11-19 13:28:03,200 - report.md|jinja - DEBUG - Running template plugin Subdirectories
2012-11-19 13:28:03,200 - report.md|jinja - DEBUG - Running template plugin Variables
2012-11-19 13:28:03,201 - report.md|jinja - DEBUG - Running template plugin Globals
2012-11-19 13:28:03,201 - report.md|jinja - DEBUG - Running template plugin Inputs
2012-11-19 13:28:03,201 - report.md|jinja - DEBUG - relative refs are ['/example.R-rout.txt', '/example.R|rout', '/example.txt', '/plot.png', '/storage.json', 'example.R-rout.txt', 'example.R|rout', 'example.txt', 'plot.png', 'storage.json']
2012-11-19 13:28:03,201 - report.md|jinja - DEBUG - jinja template data keys are DEXY_VERSION, a, abs, all, any, bin, bool, bytearray, cal, caldates, calendar, callable, chr, cmp, complex, d, datetime, dict, dir, divmod, enumerate, f, filter, float, format, hasattr, hex, highlight, id, int, isinstance, issubclass, iter, json, len, list, long, map, max, min, month, oct, ord, pformat, pow, ppjson, pygments, range, re_match, re_search, reduce, repr, reversed, round, s, set, slice, sorted, str, subdirectories, sum, tc, today, tuple, unicode, w, xrange, year, zip
2012-11-19 13:28:03,202 - report.md|jinja - DEBUG - about to create jinja template
2012-11-19 13:28:03,204 - report.md|jinja - DEBUG - about to process jinja template
2012-11-19 13:28:03,204 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc
2012-11-19 13:28:03,205 - report.md|jinja|pandoc - DEBUG - Output is not cached under c92599097f2fed1fc118e48ed95e0bd0, running...
2012-11-19 13:28:03,206 - report.md|jinja|pandoc - DEBUG - About to run 'pandoc --toc report.md -o report.docx' in 'artifacts/c92599097f2fed1fc118e48ed95e0bd0/'
2012-11-19 13:28:03,281 - report.md|jinja|pandoc - DEBUG - stdout is ''
2012-11-19 13:28:03,283 - report.md|jinja|pandoc - DEBUG - stderr is ''
2012-11-19 13:28:03,286 - report.md|jinja|pandoc|-docx - DEBUG - Running FilterArtifact:report.md|jinja|pandoc|-docx
2012-11-19 13:28:03,286 - report.md|jinja|pandoc|-docx - DEBUG - Output is not cached under d402fc4af60607659294398faf602078, running...
2012-11-19 13:28:03,472 - dexy - DEBUG - initializing all reporters where ALLREPORTS is True
2012-11-19 13:28:03,473 - dexy - DEBUG - running reporter output
2012-11-19 13:28:03,474 - report:output - DEBUG - writing report.md|jinja|pandoc|-odt to output/report.odt
2012-11-19 13:28:03,475 - report:output - DEBUG - writing report.md|jinja|pandoc to output/report.html
2012-11-19 13:28:03,475 - report:output - DEBUG - writing report.md|jinja|pandoc|-pdf to output/report.pdf
2012-11-19 13:28:03,476 - report:output - DEBUG - writing report.md|jinja|pandoc|-docx to output/report.docx
2012-11-19 13:28:03,476 - report:output - DEBUG - writing example.txt to output/example.txt
2012-11-19 13:28:03,476 - report:output - DEBUG - writing plot.png to output/plot.png
2012-11-19 13:28:03,476 - report:output - DEBUG - writing storage.json to output/storage.json
2012-11-19 13:28:03,477 - dexy - DEBUG - running reporter long
2012-11-19 13:28:03,477 - report:long - DEBUG - writing example.R|rout to output-long/example.R-rout.txt
2012-11-19 13:28:03,478 - report:long - DEBUG - writing report.md|jinja|pandoc|-odt to output-long/report.md-jinja-pandoc--odt.odt
2012-11-19 13:28:03,478 - report:long - DEBUG - writing report.md|jinja|pandoc to output-long/report.md-jinja-pandoc.html
2012-11-19 13:28:03,478 - report:long - DEBUG - writing report.md|jinja|pandoc|-pdf to output-long/report.md-jinja-pandoc--pdf.pdf
2012-11-19 13:28:03,479 - report:long - DEBUG - writing report.md|jinja|pandoc|-docx to output-long/report.md-jinja-pandoc--docx.docx
2012-11-19 13:28:03,479 - report:long - DEBUG - writing example.txt to output-long/example.txt
2012-11-19 13:28:03,479 - report:long - DEBUG - writing plot.png to output-long/plot.png
2012-11-19 13:28:03,479 - report:long - DEBUG - writing storage.json to output-long/storage.json
2012-11-19 13:28:03,479 - dexy - DEBUG - running reporter run
2012-11-19 13:28:50,348 - dexy - DEBUG - looking for doc config files in '.'
2012-11-19 13:28:50,348 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-19 13:28:50,348 - dexy - DEBUG -   skipping directory './artifacts' because it matches exclude 'artifacts'
2012-11-19 13:28:50,348 - dexy - DEBUG -   skipping directory './logs' because it matches exclude 'logs'
2012-11-19 13:28:50,348 - dexy - DEBUG -   skipping directory './output' because it matches exclude 'output'
2012-11-19 13:28:50,348 - dexy - DEBUG -   skipping directory './output-long' because it matches exclude 'output-long'
2012-11-19 13:28:50,348 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-19 13:28:50,349 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-19 13:28:50,349 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-19 13:28:50,349 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-19 13:28:50,349 - dexy - DEBUG - found doc config file './dexy.yaml':
code:
    - .R|rout

.md|jinja|pandoc:
    - pandoc: { args: '--toc' }
    - code

.md|jinja|pandoc|-odt:
    - pandoc: { ext : .odt }
    - code

.md|jinja|pandoc|-pdf:
    - pandoc: { ext : .pdf }
    - code

.md|jinja|pandoc|-docx:
    - pandoc: { ext : .docx, args: '--toc' }
    - code

2012-11-19 13:28:50,352 - dexy - DEBUG - adding task info for 'pattern:*.md|jinja|pandoc|-odt'
2012-11-19 13:28:50,352 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc|-odt'
2012-11-19 13:28:50,352 - dexy - DEBUG - adding task info for 'pattern:*.md|jinja|pandoc'
2012-11-19 13:28:50,352 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc'
2012-11-19 13:28:50,352 - dexy - DEBUG - adding dependency of 'pattern:*.R|rout' on 'bundle:code'
2012-11-19 13:28:50,352 - dexy - DEBUG - adding task info for 'pattern:*.md|jinja|pandoc|-pdf'
2012-11-19 13:28:50,352 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc|-pdf'
2012-11-19 13:28:50,352 - dexy - DEBUG - adding task info for 'pattern:*.md|jinja|pandoc|-docx'
2012-11-19 13:28:50,352 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc|-docx'
2012-11-19 13:28:50,353 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-19 13:28:50,353 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-19 13:28:50,353 - dexy - DEBUG - AST completed:
2012-11-19 13:28:50,353 - dexy - DEBUG - tree:
2012-11-19 13:28:50,353 - dexy - DEBUG -   pattern:*.md|jinja|pandoc|-odt
2012-11-19 13:28:50,353 - dexy - DEBUG -   pattern:*.md|jinja|pandoc
2012-11-19 13:28:50,353 - dexy - DEBUG -   pattern:*.md|jinja|pandoc|-pdf
2012-11-19 13:28:50,353 - dexy - DEBUG -   pattern:*.md|jinja|pandoc|-docx
2012-11-19 13:28:50,353 - dexy - DEBUG - lookup table:
2012-11-19 13:28:50,353 - dexy - DEBUG -   pattern:*.md|jinja|pandoc|-docx: {'children': ['bundle:code'], 'pandoc': {'ext': '.docx', 'args': '--toc'}}
2012-11-19 13:28:50,353 - dexy - DEBUG -   bundle:code: {'children': ['pattern:*.R|rout']}
2012-11-19 13:28:50,353 - dexy - DEBUG -   pattern:*.md|jinja|pandoc|-odt: {'children': ['bundle:code'], 'pandoc': {'ext': '.odt'}}
2012-11-19 13:28:50,353 - dexy - DEBUG -   pattern:*.md|jinja|pandoc|-pdf: {'children': ['bundle:code'], 'pandoc': {'ext': '.pdf'}}
2012-11-19 13:28:50,353 - dexy - DEBUG -   pattern:*.md|jinja|pandoc: {'children': ['bundle:code'], 'pandoc': {'args': '--toc'}}
2012-11-19 13:28:50,353 - dexy - DEBUG -   pattern:*.R|rout: {'children': []}
2012-11-19 13:28:50,353 - dexy - DEBUG - walking AST:
2012-11-19 13:28:50,353 - dexy - DEBUG - Creating task 'pattern:*.R|rout' with children '()' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x3e70f90>}'
2012-11-19 13:28:50,353 - dexy - DEBUG - Creating task 'bundle:code' with children '(PatternDoc:*.R|rout,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x3e70f90>}'
2012-11-19 13:28:50,353 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc|-odt' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x3e70f90>, 'pandoc': {'ext': '.odt'}}'
2012-11-19 13:28:50,354 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x3e70f90>, 'pandoc': {'args': '--toc'}}'
2012-11-19 13:28:50,354 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc|-pdf' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x3e70f90>, 'pandoc': {'ext': '.pdf'}}'
2012-11-19 13:28:50,354 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc|-docx' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x3e70f90>, 'pandoc': {'ext': '.docx', 'args': '--toc'}}'
2012-11-19 13:28:50,354 - dexy - DEBUG - batch id is 1002
2012-11-19 13:28:50,354 - dexy - DEBUG - running dexy with config:
2012-11-19 13:28:50,354 - dexy - DEBUG -   artifacts_dir: artifacts
2012-11-19 13:28:50,354 - dexy - DEBUG -   batch_id: 1002
2012-11-19 13:28:50,354 - dexy - DEBUG -   batch_info: {'start_time': 1353360530.354315}
2012-11-19 13:28:50,354 - dexy - DEBUG -   config_file: dexy.conf
2012-11-19 13:28:50,355 - dexy - DEBUG -   danger: False
2012-11-19 13:28:50,355 - dexy - DEBUG -   db_alias: sqlite3
2012-11-19 13:28:50,355 - dexy - DEBUG -   db_file: dexy.sqlite3
2012-11-19 13:28:50,355 - dexy - DEBUG -   disable_tests: False
2012-11-19 13:28:50,355 - dexy - DEBUG -   doc_config: OrderedDict([('.', "code:\n    - .R|rout\n\n.md|jinja|pandoc:\n    - pandoc: { args: '--toc' }\n    - code\n\n.md|jinja|pandoc|-odt:\n    - pandoc: { ext : .odt }\n    - code\n\n.md|jinja|pandoc|-pdf:\n    - pandoc: { ext : .pdf }\n    - code\n\n.md|jinja|pandoc|-docx:\n    - pandoc: { ext : .docx, args: '--toc' }\n    - code\n")])
2012-11-19 13:28:50,355 - dexy - DEBUG -   dont_use_cache: False
2012-11-19 13:28:50,355 - dexy - DEBUG -   dry_run: False
2012-11-19 13:28:50,355 - dexy - DEBUG -   exclude: .git, .svn, tmp, cache
2012-11-19 13:28:50,355 - dexy - DEBUG -   exclude_also: 
2012-11-19 13:28:50,355 - dexy - DEBUG -   globals: 
2012-11-19 13:28:50,355 - dexy - DEBUG -   hashfunction: md5
2012-11-19 13:28:50,355 - dexy - DEBUG -   ignore_nonzero_exit: False
2012-11-19 13:28:50,355 - dexy - DEBUG -   log_dir: logs
2012-11-19 13:28:50,355 - dexy - DEBUG -   log_file: dexy.log
2012-11-19 13:28:50,355 - dexy - DEBUG -   log_format: %(asctime)s - %(name)s - %(levelname)s - %(message)s
2012-11-19 13:28:50,355 - dexy - DEBUG -   log_level: DEBUG
2012-11-19 13:28:50,355 - dexy - DEBUG -   profile: False
2012-11-19 13:28:50,355 - dexy - DEBUG -   recurse: True
2012-11-19 13:28:50,355 - dexy - DEBUG -   reports: 
2012-11-19 13:28:50,355 - dexy - DEBUG -   silent: False
2012-11-19 13:28:50,355 - dexy - DEBUG -   state: None
2012-11-19 13:28:50,356 - dexy - DEBUG -   target: False
2012-11-19 13:28:50,356 - dexy - DEBUG -   uselocals: False
2012-11-19 13:28:50,356 - *.R|rout - DEBUG - creating child of patterndoc *.R|rout: example.R|rout
2012-11-19 13:28:50,363 - *.md|jinja|pandoc|-odt - DEBUG - creating child of patterndoc *.md|jinja|pandoc|-odt: report.md|jinja|pandoc|-odt
2012-11-19 13:28:50,365 - example.R - DEBUG - Setting up InitialArtifact:example.R
2012-11-19 13:28:50,366 - example.R - DEBUG - Setting hashstring for example.R to 37efdae66ef5056d41883121456b3c86
2012-11-19 13:28:50,366 - example.R - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:50,367 - dexy - DEBUG - Creating new notification channel 'newchild'
2012-11-19 13:28:50,367 - example.R|rout - DEBUG - Setting up FilterArtifact:example.R|rout
2012-11-19 13:28:50,396 - example.R|rout - DEBUG - Setting hashstring for example.R|rout to 16229d63a9449308b5f2f45013c9b2ab
2012-11-19 13:28:50,397 - example.R|rout - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:50,399 - *.md|jinja|pandoc - DEBUG - creating child of patterndoc *.md|jinja|pandoc: report.md|jinja|pandoc
2012-11-19 13:28:50,401 - *.md|jinja|pandoc|-pdf - DEBUG - creating child of patterndoc *.md|jinja|pandoc|-pdf: report.md|jinja|pandoc|-pdf
2012-11-19 13:28:50,404 - *.md|jinja|pandoc|-docx - DEBUG - creating child of patterndoc *.md|jinja|pandoc|-docx: report.md|jinja|pandoc|-docx
2012-11-19 13:28:50,406 - report.md - DEBUG - Setting up InitialArtifact:report.md
2012-11-19 13:28:50,407 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-19 13:28:50,407 - report.md - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:50,408 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja
2012-11-19 13:28:50,411 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to 2a72b42ef21c8c1f4e0febeec01055a0
2012-11-19 13:28:50,411 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:50,411 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc
2012-11-19 13:28:50,424 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to 29996ad27404cf4801ddb34257031d71
2012-11-19 13:28:50,425 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:50,425 - report.md|jinja|pandoc|-odt - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc|-odt
2012-11-19 13:28:50,425 - report.md|jinja|pandoc|-odt - DEBUG - Setting hashstring for report.md|jinja|pandoc|-odt to 967edcbaf43c70b71d5aba20b1173d6f
2012-11-19 13:28:50,425 - report.md|jinja|pandoc|-odt - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:50,426 - report.md - DEBUG - Setting up InitialArtifact:report.md
2012-11-19 13:28:50,426 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-19 13:28:50,426 - report.md - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:50,426 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja
2012-11-19 13:28:50,427 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to 5827f92eeba9814fbb4d56feb048b948
2012-11-19 13:28:50,428 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:50,429 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc
2012-11-19 13:28:50,444 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to d72203e81399796ef0d7108e22f89626
2012-11-19 13:28:50,446 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:50,447 - report.md - DEBUG - Setting up InitialArtifact:report.md
2012-11-19 13:28:50,448 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-19 13:28:50,448 - report.md - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:50,449 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja
2012-11-19 13:28:50,451 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to 999ed730dae84c7227d1fd380e280f57
2012-11-19 13:28:50,452 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:50,453 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc
2012-11-19 13:28:50,470 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to 374dafaaec8b9be60e3a3b94ce9df20c
2012-11-19 13:28:50,470 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:50,471 - report.md|jinja|pandoc|-pdf - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc|-pdf
2012-11-19 13:28:50,473 - report.md|jinja|pandoc|-pdf - DEBUG - Setting hashstring for report.md|jinja|pandoc|-pdf to 366f465f37a9d65c0bee00cd76d061df
2012-11-19 13:28:50,473 - report.md|jinja|pandoc|-pdf - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:50,474 - report.md - DEBUG - Setting up InitialArtifact:report.md
2012-11-19 13:28:50,475 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-19 13:28:50,475 - report.md - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:50,476 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja
2012-11-19 13:28:50,478 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to 679cc4370ea3018f8d90b3a36b8dc579
2012-11-19 13:28:50,479 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:50,480 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc
2012-11-19 13:28:50,496 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to c92599097f2fed1fc118e48ed95e0bd0
2012-11-19 13:28:50,498 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:50,499 - report.md|jinja|pandoc|-docx - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc|-docx
2012-11-19 13:28:50,501 - report.md|jinja|pandoc|-docx - DEBUG - Setting hashstring for report.md|jinja|pandoc|-docx to d402fc4af60607659294398faf602078
2012-11-19 13:28:50,501 - report.md|jinja|pandoc|-docx - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:50,504 - example.R|rout - DEBUG - Running FilterArtifact:example.R|rout
2012-11-19 13:28:50,504 - example.R|rout - DEBUG - Output is cached under 16229d63a9449308b5f2f45013c9b2ab, reconstituting...
2012-11-19 13:28:50,506 - example.R|rout - DEBUG - Reconstituting example.txt from database and cache
2012-11-19 13:28:50,507 - example.R|rout - DEBUG - adding additional doc example.txt (created by example.R|rout)
2012-11-19 13:28:50,507 - example.txt - DEBUG - Setting up InitialVirtualArtifact:example.txt
2012-11-19 13:28:50,507 - example.txt - DEBUG - Setting hashstring for example.txt to 67ca147287010eee7af5529b040a79ab
2012-11-19 13:28:50,507 - example.txt - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:50,508 - example.R|rout - DEBUG - Reconstituting example.txt from database and cache
2012-11-19 13:28:50,508 - example.R|rout - DEBUG - Reconstituting plot.png from database and cache
2012-11-19 13:28:50,508 - example.R|rout - DEBUG - adding additional doc plot.png (created by example.R|rout)
2012-11-19 13:28:50,508 - plot.png - DEBUG - Setting up InitialVirtualArtifact:plot.png
2012-11-19 13:28:50,508 - plot.png - DEBUG - Setting hashstring for plot.png to a4249c9911b3be397dc5ab29237545fe
2012-11-19 13:28:50,509 - plot.png - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:50,509 - example.R|rout - DEBUG - Reconstituting plot.png from database and cache
2012-11-19 13:28:50,509 - example.R|rout - DEBUG - Reconstituting storage.json from database and cache
2012-11-19 13:28:50,509 - example.R|rout - DEBUG - adding additional doc storage.json (created by example.R|rout)
2012-11-19 13:28:50,509 - storage.json - DEBUG - Setting up InitialVirtualArtifact:storage.json
2012-11-19 13:28:50,510 - storage.json - DEBUG - Setting hashstring for storage.json to 6248a02508321609e66ae3d947f25aaa
2012-11-19 13:28:50,510 - storage.json - DEBUG - setting up output data of class GenericData
2012-11-19 13:28:50,510 - example.R|rout - DEBUG - Reconstituting storage.json from database and cache
2012-11-19 13:28:50,511 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja
2012-11-19 13:28:50,512 - report.md|jinja - DEBUG - Output is cached under 2a72b42ef21c8c1f4e0febeec01055a0, reconstituting...
2012-11-19 13:28:50,512 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc
2012-11-19 13:28:50,513 - report.md|jinja|pandoc - DEBUG - Output is cached under 29996ad27404cf4801ddb34257031d71, reconstituting...
2012-11-19 13:28:50,513 - report.md|jinja|pandoc|-odt - DEBUG - Running FilterArtifact:report.md|jinja|pandoc|-odt
2012-11-19 13:28:50,513 - report.md|jinja|pandoc|-odt - DEBUG - Output is cached under 967edcbaf43c70b71d5aba20b1173d6f, reconstituting...
2012-11-19 13:28:50,514 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja
2012-11-19 13:28:50,514 - report.md|jinja - DEBUG - Output is not cached under 5827f92eeba9814fbb4d56feb048b948, running...
2012-11-19 13:28:50,516 - report.md|jinja - DEBUG - setting up jinja FileSystemLoader with dirs artifacts/5827f92eeba9814fbb4d56feb048b948/, artifacts/5827f92eeba9814fbb4d56feb048b948
2012-11-19 13:28:50,516 - report.md|jinja - DEBUG - setting up jinja environment
2012-11-19 13:28:50,516 - report.md|jinja - DEBUG - Creating jinja2 environment with: undefined: <class 'jinja2.runtime.StrictUndefined'>, loader: <jinja2.loaders.FileSystemLoader object at 0x3f4e050>
2012-11-19 13:28:50,516 - report.md|jinja - DEBUG - initializing template
2012-11-19 13:28:50,517 - report.md|jinja - DEBUG - Running template plugin PrettyPrintJson
2012-11-19 13:28:50,517 - report.md|jinja - DEBUG - Running template plugin PythonDatetime
2012-11-19 13:28:50,517 - report.md|jinja - DEBUG - Running template plugin DexyVersion
2012-11-19 13:28:50,517 - report.md|jinja - DEBUG - Running template plugin SimpleJson
2012-11-19 13:28:50,517 - report.md|jinja - DEBUG - Running template plugin PrettyPrinter
2012-11-19 13:28:50,518 - report.md|jinja - DEBUG - Running template plugin RegularExpressions
2012-11-19 13:28:50,518 - report.md|jinja - DEBUG - Running template plugin PythonBuiltins
2012-11-19 13:28:50,518 - report.md|jinja - DEBUG - Running template plugin PygmentsStylesheet
2012-11-19 13:28:50,545 - report.md|jinja - DEBUG - Running template plugin Subdirectories
2012-11-19 13:28:50,545 - report.md|jinja - DEBUG - Running template plugin Variables
2012-11-19 13:28:50,546 - report.md|jinja - DEBUG - Running template plugin Globals
2012-11-19 13:28:50,546 - report.md|jinja - DEBUG - Running template plugin Inputs
2012-11-19 13:28:50,546 - report.md|jinja - DEBUG - relative refs are ['/example.R-rout.txt', '/example.R|rout', u'/example.txt', u'/plot.png', u'/storage.json', 'example.R-rout.txt', 'example.R|rout', u'example.txt', u'plot.png', u'storage.json']
2012-11-19 13:28:50,546 - report.md|jinja - DEBUG - jinja template data keys are DEXY_VERSION, a, abs, all, any, bin, bool, bytearray, cal, caldates, calendar, callable, chr, cmp, complex, d, datetime, dict, dir, divmod, enumerate, f, filter, float, format, hasattr, hex, highlight, id, int, isinstance, issubclass, iter, json, len, list, long, map, max, min, month, oct, ord, pformat, pow, ppjson, pygments, range, re_match, re_search, reduce, repr, reversed, round, s, set, slice, sorted, str, subdirectories, sum, tc, today, tuple, unicode, w, xrange, year, zip
2012-11-19 13:28:50,547 - report.md|jinja - DEBUG - about to create jinja template
2012-11-19 13:28:50,550 - report.md|jinja - DEBUG - about to process jinja template
2012-11-19 13:28:50,551 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc
2012-11-19 13:28:50,551 - report.md|jinja|pandoc - DEBUG - Output is not cached under d72203e81399796ef0d7108e22f89626, running...
2012-11-19 13:28:50,553 - report.md|jinja|pandoc - DEBUG - About to run 'pandoc --toc report.md -o report.html' in 'artifacts/d72203e81399796ef0d7108e22f89626/'
2012-11-19 13:28:50,603 - report.md|jinja|pandoc - DEBUG - stdout is ''
2012-11-19 13:28:50,604 - report.md|jinja|pandoc - DEBUG - stderr is ''
2012-11-19 13:28:50,609 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja
2012-11-19 13:28:50,610 - report.md|jinja - DEBUG - Output is cached under 999ed730dae84c7227d1fd380e280f57, reconstituting...
2012-11-19 13:28:50,612 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc
2012-11-19 13:28:50,613 - report.md|jinja|pandoc - DEBUG - Output is cached under 374dafaaec8b9be60e3a3b94ce9df20c, reconstituting...
2012-11-19 13:28:50,614 - report.md|jinja|pandoc|-pdf - DEBUG - Running FilterArtifact:report.md|jinja|pandoc|-pdf
2012-11-19 13:28:50,615 - report.md|jinja|pandoc|-pdf - DEBUG - Output is cached under 366f465f37a9d65c0bee00cd76d061df, reconstituting...
2012-11-19 13:28:50,615 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja
2012-11-19 13:28:50,616 - report.md|jinja - DEBUG - Output is cached under 679cc4370ea3018f8d90b3a36b8dc579, reconstituting...
2012-11-19 13:28:50,616 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc
2012-11-19 13:28:50,616 - report.md|jinja|pandoc - DEBUG - Output is cached under c92599097f2fed1fc118e48ed95e0bd0, reconstituting...
2012-11-19 13:28:50,617 - report.md|jinja|pandoc|-docx - DEBUG - Running FilterArtifact:report.md|jinja|pandoc|-docx
2012-11-19 13:28:50,617 - report.md|jinja|pandoc|-docx - DEBUG - Output is cached under d402fc4af60607659294398faf602078, reconstituting...
2012-11-19 13:28:50,811 - dexy - DEBUG - initializing all reporters where ALLREPORTS is True
2012-11-19 13:28:50,811 - dexy - DEBUG - running reporter output
2012-11-19 13:28:50,813 - report:output - DEBUG - writing report.md|jinja|pandoc|-odt to output/report.odt
2012-11-19 13:28:50,814 - report:output - DEBUG - writing report.md|jinja|pandoc to output/report.html
2012-11-19 13:28:50,815 - report:output - DEBUG - writing report.md|jinja|pandoc|-pdf to output/report.pdf
2012-11-19 13:28:50,816 - report:output - DEBUG - writing report.md|jinja|pandoc|-docx to output/report.docx
2012-11-19 13:28:50,817 - report:output - DEBUG - writing example.txt to output/example.txt
2012-11-19 13:28:50,818 - report:output - DEBUG - writing plot.png to output/plot.png
2012-11-19 13:28:50,819 - report:output - DEBUG - writing storage.json to output/storage.json
2012-11-19 13:28:50,819 - dexy - DEBUG - running reporter long
2012-11-19 13:28:50,820 - report:long - DEBUG - writing example.R|rout to output-long/example.R-rout.txt
2012-11-19 13:28:50,820 - report:long - DEBUG - writing report.md|jinja|pandoc|-odt to output-long/report.md-jinja-pandoc--odt.odt
2012-11-19 13:28:50,820 - report:long - DEBUG - writing report.md|jinja|pandoc to output-long/report.md-jinja-pandoc.html
2012-11-19 13:28:50,820 - report:long - DEBUG - writing report.md|jinja|pandoc|-pdf to output-long/report.md-jinja-pandoc--pdf.pdf
2012-11-19 13:28:50,820 - report:long - DEBUG - writing report.md|jinja|pandoc|-docx to output-long/report.md-jinja-pandoc--docx.docx
2012-11-19 13:28:50,821 - report:long - DEBUG - writing example.txt to output-long/example.txt
2012-11-19 13:28:50,821 - report:long - DEBUG - writing plot.png to output-long/plot.png
2012-11-19 13:28:50,821 - report:long - DEBUG - writing storage.json to output-long/storage.json
2012-11-19 13:28:50,821 - dexy - DEBUG - running reporter run
2012-11-24 13:24:45,620 - dexy - DEBUG - looking for doc config files in '.'
2012-11-24 13:24:45,632 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-24 13:24:45,632 - dexy - DEBUG -   skipping directory './artifacts' because it matches exclude 'artifacts'
2012-11-24 13:24:45,633 - dexy - DEBUG -   skipping directory './logs' because it matches exclude 'logs'
2012-11-24 13:24:45,633 - dexy - DEBUG -   skipping directory './output' because it matches exclude 'output'
2012-11-24 13:24:45,633 - dexy - DEBUG -   skipping directory './output-long' because it matches exclude 'output-long'
2012-11-24 13:24:45,633 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-24 13:24:45,633 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-24 13:24:45,633 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-24 13:24:45,634 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-24 13:24:45,634 - dexy - DEBUG - found doc config file './dexy.yaml':
code:
    - .R|rout

.md|jinja|pandoc:
    - code

.md|jinja|pandoc|-odt:
    - pandoc: { ext : .odt }
    - code

.md|jinja|pandoc|-pdf:
    - pandoc: { ext : .pdf }
    - code

.md|jinja|pandoc|-docx:
    - pandoc: { ext : .docx }
    - code

.md|jinja|pandoc|-epub:
    - pandoc: { ext : .epub }
    - code

2012-11-24 13:24:45,643 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc'
2012-11-24 13:24:45,643 - dexy - DEBUG - treating code as a bundle name, not prepending directory .
2012-11-24 13:24:45,643 - dexy - DEBUG - adding dependency of 'pattern:*.R|rout' on 'bundle:code'
2012-11-24 13:24:45,644 - dexy - DEBUG - adding task info for 'pattern:*.md|jinja|pandoc|-odt'
2012-11-24 13:24:45,644 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc|-odt'
2012-11-24 13:24:45,644 - dexy - DEBUG - adding task info for 'pattern:*.md|jinja|pandoc|-epub'
2012-11-24 13:24:45,644 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc|-epub'
2012-11-24 13:24:45,644 - dexy - DEBUG - adding task info for 'pattern:*.md|jinja|pandoc|-pdf'
2012-11-24 13:24:45,644 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc|-pdf'
2012-11-24 13:24:45,645 - dexy - DEBUG - adding task info for 'pattern:*.md|jinja|pandoc|-docx'
2012-11-24 13:24:45,645 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc|-docx'
2012-11-24 13:24:45,645 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-24 13:24:45,645 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-24 13:24:45,645 - dexy - DEBUG - AST completed:
2012-11-24 13:24:45,645 - dexy - DEBUG - tree:
  pattern:*.md|jinja|pandoc
  pattern:*.md|jinja|pandoc|-odt
  pattern:*.md|jinja|pandoc|-epub
  pattern:*.md|jinja|pandoc|-pdf
  pattern:*.md|jinja|pandoc|-docx
lookup table:
    pattern:*.md|jinja|pandoc|-docx: {'children': ['bundle:code'], 'pandoc': {'ext': '.docx'}}
    bundle:code: {'children': ['pattern:*.R|rout']}
    pattern:*.md|jinja|pandoc|-epub: {'children': ['bundle:code'], 'pandoc': {'ext': '.epub'}}
    pattern:*.md|jinja|pandoc|-odt: {'children': ['bundle:code'], 'pandoc': {'ext': '.odt'}}
    pattern:*.md|jinja|pandoc|-pdf: {'children': ['bundle:code'], 'pandoc': {'ext': '.pdf'}}
    pattern:*.md|jinja|pandoc: {'children': ['bundle:code']}
    pattern:*.R|rout: {'children': []}
2012-11-24 13:24:45,646 - dexy - DEBUG - walking AST:
2012-11-24 13:24:45,646 - dexy - DEBUG - Creating task 'pattern:*.R|rout' with children '()' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x495e250>}'
2012-11-24 13:24:45,646 - dexy - DEBUG - Creating task 'bundle:code' with children '(PatternDoc:*.R|rout,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x495e250>}'
2012-11-24 13:24:45,646 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x495e250>}'
2012-11-24 13:24:45,646 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc|-odt' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x495e250>, 'pandoc': {'ext': '.odt'}}'
2012-11-24 13:24:45,646 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc|-epub' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x495e250>, 'pandoc': {'ext': '.epub'}}'
2012-11-24 13:24:45,646 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc|-pdf' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x495e250>, 'pandoc': {'ext': '.pdf'}}'
2012-11-24 13:24:45,646 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc|-docx' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x495e250>, 'pandoc': {'ext': '.docx'}}'
2012-11-24 13:24:45,677 - dexy - DEBUG - batch id is 1003
2012-11-24 13:24:45,678 - dexy - DEBUG - running dexy with config:
2012-11-24 13:24:45,678 - dexy - DEBUG -   artifacts_dir: artifacts
2012-11-24 13:24:45,678 - dexy - DEBUG -   batch_id: 1003
2012-11-24 13:24:45,678 - dexy - DEBUG -   batch_info: {'start_time': 1353792285.646749}
2012-11-24 13:24:45,678 - dexy - DEBUG -   config_file: dexy.conf
2012-11-24 13:24:45,679 - dexy - DEBUG -   danger: False
2012-11-24 13:24:45,679 - dexy - DEBUG -   db_alias: sqlite3
2012-11-24 13:24:45,679 - dexy - DEBUG -   db_file: dexy.sqlite3
2012-11-24 13:24:45,679 - dexy - DEBUG -   disable_tests: False
2012-11-24 13:24:45,679 - dexy - DEBUG -   doc_config: OrderedDict([('.', 'code:\n    - .R|rout\n\n.md|jinja|pandoc:\n    - code\n\n.md|jinja|pandoc|-odt:\n    - pandoc: { ext : .odt }\n    - code\n\n.md|jinja|pandoc|-pdf:\n    - pandoc: { ext : .pdf }\n    - code\n\n.md|jinja|pandoc|-docx:\n    - pandoc: { ext : .docx }\n    - code\n\n.md|jinja|pandoc|-epub:\n    - pandoc: { ext : .epub }\n    - code\n')])
2012-11-24 13:24:45,679 - dexy - DEBUG -   dont_use_cache: False
2012-11-24 13:24:45,680 - dexy - DEBUG -   dry_run: False
2012-11-24 13:24:45,680 - dexy - DEBUG -   exclude: .git, .svn, tmp, cache
2012-11-24 13:24:45,680 - dexy - DEBUG -   exclude_also: 
2012-11-24 13:24:45,680 - dexy - DEBUG -   globals: 
2012-11-24 13:24:45,680 - dexy - DEBUG -   hashfunction: md5
2012-11-24 13:24:45,680 - dexy - DEBUG -   ignore_nonzero_exit: False
2012-11-24 13:24:45,680 - dexy - DEBUG -   log_dir: logs
2012-11-24 13:24:45,680 - dexy - DEBUG -   log_file: dexy.log
2012-11-24 13:24:45,680 - dexy - DEBUG -   log_format: %(asctime)s - %(name)s - %(levelname)s - %(message)s
2012-11-24 13:24:45,680 - dexy - DEBUG -   log_level: DEBUG
2012-11-24 13:24:45,680 - dexy - DEBUG -   platform_system: Linux
2012-11-24 13:24:45,680 - dexy - DEBUG -   profile: False
2012-11-24 13:24:45,680 - dexy - DEBUG -   recurse: True
2012-11-24 13:24:45,681 - dexy - DEBUG -   reports: 
2012-11-24 13:24:45,681 - dexy - DEBUG -   siblings: False
2012-11-24 13:24:45,681 - dexy - DEBUG -   silent: False
2012-11-24 13:24:45,681 - dexy - DEBUG -   state: None
2012-11-24 13:24:45,681 - dexy - DEBUG -   target: False
2012-11-24 13:24:45,681 - dexy - DEBUG -   uselocals: False
2012-11-24 13:24:45,681 - *.R|rout - DEBUG - creating child of patterndoc *.R|rout: example.R|rout
2012-11-24 13:24:45,682 - *.md|jinja|pandoc - DEBUG - creating child of patterndoc *.md|jinja|pandoc: report.md|jinja|pandoc
2012-11-24 13:24:45,682 - example.R - DEBUG - Setting up InitialArtifact:example.R::Doc:example.R|rout
2012-11-24 13:24:45,683 - example.R - DEBUG - Setting hashstring for example.R to 37efdae66ef5056d41883121456b3c86
2012-11-24 13:24:45,683 - example.R - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:45,683 - dexy - DEBUG - Creating new notification channel 'newchild'
2012-11-24 13:24:45,683 - example.R|rout - DEBUG - Setting up FilterArtifact:example.R|rout::Doc:example.R|rout
2012-11-24 13:24:45,880 - example.R|rout - DEBUG - Setting hashstring for example.R|rout to db00c9d7c68b1858edb98ddfff3140fb
2012-11-24 13:24:45,880 - example.R|rout - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:45,881 - *.md|jinja|pandoc|-odt - DEBUG - creating child of patterndoc *.md|jinja|pandoc|-odt: report.md|jinja|pandoc|-odt
2012-11-24 13:24:45,881 - *.md|jinja|pandoc|-epub - DEBUG - creating child of patterndoc *.md|jinja|pandoc|-epub: report.md|jinja|pandoc|-epub
2012-11-24 13:24:45,882 - *.md|jinja|pandoc|-pdf - DEBUG - creating child of patterndoc *.md|jinja|pandoc|-pdf: report.md|jinja|pandoc|-pdf
2012-11-24 13:24:45,883 - *.md|jinja|pandoc|-docx - DEBUG - creating child of patterndoc *.md|jinja|pandoc|-docx: report.md|jinja|pandoc|-docx
2012-11-24 13:24:45,883 - report.md - DEBUG - Setting up InitialArtifact:report.md::Doc:report.md|jinja|pandoc
2012-11-24 13:24:45,884 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-24 13:24:45,884 - report.md - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:45,884 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc
2012-11-24 13:24:45,885 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to 3b51ad54d83e46c731e15d04028b1298
2012-11-24 13:24:45,885 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:45,885 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc
2012-11-24 13:24:45,913 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to 56ee4f9438b2be075327e5126137ce95
2012-11-24 13:24:45,914 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:45,916 - report.md - DEBUG - Setting up InitialArtifact:report.md::Doc:report.md|jinja|pandoc|-odt
2012-11-24 13:24:45,917 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-24 13:24:45,917 - report.md - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:45,918 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-odt
2012-11-24 13:24:45,920 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to d781adeca229bf3c204d4559e7142f82
2012-11-24 13:24:45,921 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:45,921 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-odt
2012-11-24 13:24:45,935 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to 5e3fd51d5ca109fcd8ea025ec8812a58
2012-11-24 13:24:45,936 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:45,938 - report.md|jinja|pandoc|-odt - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc|-odt::Doc:report.md|jinja|pandoc|-odt
2012-11-24 13:24:45,940 - report.md|jinja|pandoc|-odt - DEBUG - Setting hashstring for report.md|jinja|pandoc|-odt to abc9513aa869aba5c54d4f7bd5fb212a
2012-11-24 13:24:45,940 - report.md|jinja|pandoc|-odt - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:45,941 - report.md - DEBUG - Setting up InitialArtifact:report.md::Doc:report.md|jinja|pandoc|-epub
2012-11-24 13:24:45,942 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-24 13:24:45,943 - report.md - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:45,943 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-epub
2012-11-24 13:24:45,946 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to 268ddcdbbb07b992279bfee51f3fc10a
2012-11-24 13:24:45,947 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:45,948 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-epub
2012-11-24 13:24:45,965 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to b27f64993498e575dfb34cb451b98a60
2012-11-24 13:24:45,967 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:45,968 - report.md|jinja|pandoc|-epub - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc|-epub::Doc:report.md|jinja|pandoc|-epub
2012-11-24 13:24:45,970 - report.md|jinja|pandoc|-epub - DEBUG - Setting hashstring for report.md|jinja|pandoc|-epub to 9f6b0ac9c642cc52dcb00a5996eec4ba
2012-11-24 13:24:45,971 - report.md|jinja|pandoc|-epub - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:45,972 - report.md - DEBUG - Setting up InitialArtifact:report.md::Doc:report.md|jinja|pandoc|-pdf
2012-11-24 13:24:45,973 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-24 13:24:45,973 - report.md - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:45,974 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-pdf
2012-11-24 13:24:45,977 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to b93ce2270e0bca12beabeb94273e155c
2012-11-24 13:24:45,978 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:45,979 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-pdf
2012-11-24 13:24:45,994 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to 9a2ebc0b68c10b24f3373072e135983a
2012-11-24 13:24:45,995 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:45,997 - report.md|jinja|pandoc|-pdf - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc|-pdf::Doc:report.md|jinja|pandoc|-pdf
2012-11-24 13:24:45,999 - report.md|jinja|pandoc|-pdf - DEBUG - Setting hashstring for report.md|jinja|pandoc|-pdf to dd20b3681eff2a48ec03888ef2adfc12
2012-11-24 13:24:45,999 - report.md|jinja|pandoc|-pdf - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:46,000 - report.md - DEBUG - Setting up InitialArtifact:report.md::Doc:report.md|jinja|pandoc|-docx
2012-11-24 13:24:46,001 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-24 13:24:46,002 - report.md - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:46,003 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-docx
2012-11-24 13:24:46,004 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to f143a1cc23ee4ca0350b69101644bfe2
2012-11-24 13:24:46,005 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:46,005 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-docx
2012-11-24 13:24:46,019 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to 5a19c3f5c58a1f5da222674b87c237ed
2012-11-24 13:24:46,020 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:46,022 - report.md|jinja|pandoc|-docx - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc|-docx::Doc:report.md|jinja|pandoc|-docx
2012-11-24 13:24:46,024 - report.md|jinja|pandoc|-docx - DEBUG - Setting hashstring for report.md|jinja|pandoc|-docx to de75484514388939aa97dd3f00993cb4
2012-11-24 13:24:46,024 - report.md|jinja|pandoc|-docx - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:46,027 - example.R|rout - DEBUG - Running FilterArtifact:example.R|rout::Doc:example.R|rout
2012-11-24 13:24:46,028 - example.R|rout - DEBUG - Output is not cached under db00c9d7c68b1858edb98ddfff3140fb, running...
2012-11-24 13:24:46,030 - example.R|rout - DEBUG - setting up wd for example.R|rout. exists already: artifacts/db00c9d7c68b1858edb98ddfff3140fb/
2012-11-24 13:24:46,054 - example.R|rout - DEBUG - about to run 'R CMD BATCH --vanilla --quiet --slave --no-timing  example.R  example.txt' in 'artifacts/db00c9d7c68b1858edb98ddfff3140fb/'
2012-11-24 13:24:47,796 - example.R|rout - DEBUG - stdout is ''
2012-11-24 13:24:47,797 - example.R|rout - DEBUG - stderr is ''
2012-11-24 13:24:47,798 - example.R|rout - DEBUG - adding new files found in artifacts/db00c9d7c68b1858edb98ddfff3140fb for example.R|rout
2012-11-24 13:24:47,800 - example.R|rout - DEBUG - adding additional doc example.txt (created by example.R|rout)
2012-11-24 13:24:47,801 - example.txt - DEBUG - Setting up InitialVirtualArtifact:example.txt::Doc:example.txt
2012-11-24 13:24:47,802 - example.txt - DEBUG - Setting hashstring for example.txt to 67ca147287010eee7af5529b040a79ab
2012-11-24 13:24:47,803 - example.txt - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:47,804 - example.R|rout - DEBUG - adding additional doc plot.png (created by example.R|rout)
2012-11-24 13:24:47,805 - plot.png - DEBUG - Setting up InitialVirtualArtifact:plot.png::Doc:plot.png
2012-11-24 13:24:47,805 - plot.png - DEBUG - Setting hashstring for plot.png to 2fcd6e22786b435da431867dbef1647e
2012-11-24 13:24:47,813 - plot.png - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:47,813 - example.R|rout - DEBUG - adding additional doc storage.json (created by example.R|rout)
2012-11-24 13:24:47,814 - storage.json - DEBUG - Setting up InitialVirtualArtifact:storage.json::Doc:storage.json
2012-11-24 13:24:47,814 - storage.json - DEBUG - Setting hashstring for storage.json to dcebc4433e4a66776a1573a5bc232c98
2012-11-24 13:24:47,814 - storage.json - DEBUG - setting up output data of class GenericData
2012-11-24 13:24:47,815 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc
2012-11-24 13:24:47,816 - report.md|jinja - DEBUG - Output is not cached under 3b51ad54d83e46c731e15d04028b1298, running...
2012-11-24 13:24:47,816 - report.md|jinja - DEBUG - setting up wd for report.md|jinja. exists already: artifacts/3b51ad54d83e46c731e15d04028b1298/
2012-11-24 13:24:47,967 - report.md|jinja - DEBUG - setting up jinja FileSystemLoader with dirs ., artifacts/3b51ad54d83e46c731e15d04028b1298/, artifacts/3b51ad54d83e46c731e15d04028b1298
2012-11-24 13:24:47,968 - report.md|jinja - DEBUG - setting up jinja environment
2012-11-24 13:24:47,968 - report.md|jinja - DEBUG - Creating jinja2 environment with: undefined: <class 'jinja2.runtime.StrictUndefined'>, loader: <jinja2.loaders.FileSystemLoader object at 0x49b8a50>
2012-11-24 13:24:47,969 - report.md|jinja - DEBUG - initializing template
2012-11-24 13:24:47,969 - report.md|jinja - DEBUG - Running template plugin PrettyPrintJson
2012-11-24 13:24:47,969 - report.md|jinja - DEBUG - Running template plugin PythonDatetime
2012-11-24 13:24:47,969 - report.md|jinja - DEBUG - Running template plugin DexyVersion
2012-11-24 13:24:47,970 - report.md|jinja - DEBUG - Running template plugin SimpleJson
2012-11-24 13:24:47,970 - report.md|jinja - DEBUG - Running template plugin PrettyPrinter
2012-11-24 13:24:47,970 - report.md|jinja - DEBUG - Running template plugin RegularExpressions
2012-11-24 13:24:47,970 - report.md|jinja - DEBUG - Running template plugin PythonBuiltins
2012-11-24 13:24:47,971 - report.md|jinja - DEBUG - Running template plugin PygmentsStylesheet
2012-11-24 13:24:48,025 - report.md|jinja - DEBUG - Running template plugin Subdirectories
2012-11-24 13:24:48,025 - report.md|jinja - DEBUG - Running template plugin Variables
2012-11-24 13:24:48,026 - report.md|jinja - DEBUG - Running template plugin Globals
2012-11-24 13:24:48,026 - report.md|jinja - DEBUG - Running template plugin Inputs
2012-11-24 13:24:48,026 - report.md|jinja - DEBUG - jinja template data keys are DEXY_VERSION, a, abs, all, any, bin, bool, bytearray, cal, caldates, calendar, callable, chr, cmp, complex, d, datetime, dict, dir, divmod, enumerate, f, filter, float, format, hasattr, hex, highlight, id, int, isinstance, issubclass, iter, json, len, list, long, map, max, min, month, oct, ord, pformat, pow, ppjson, pygments, range, re_match, re_search, reduce, repr, reversed, round, s, set, slice, sorted, str, subdirectories, sum, tc, today, tuple, unicode, w, xrange, year, zip
2012-11-24 13:24:48,027 - report.md|jinja - DEBUG - about to create jinja template
2012-11-24 13:24:48,030 - report.md|jinja - DEBUG - about to process jinja template
2012-11-24 13:24:48,031 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc
2012-11-24 13:24:48,031 - report.md|jinja|pandoc - DEBUG - Output is not cached under 56ee4f9438b2be075327e5126137ce95, running...
2012-11-24 13:24:48,032 - report.md|jinja|pandoc - DEBUG - setting up wd for report.md|jinja|pandoc. exists already: artifacts/56ee4f9438b2be075327e5126137ce95/
2012-11-24 13:24:48,033 - report.md|jinja|pandoc - DEBUG - about to run 'pandoc  report.md -o report.html' in 'artifacts/56ee4f9438b2be075327e5126137ce95/'
2012-11-24 13:24:48,118 - report.md|jinja|pandoc - DEBUG - stdout is ''
2012-11-24 13:24:48,120 - report.md|jinja|pandoc - DEBUG - stderr is ''
2012-11-24 13:24:48,125 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-odt
2012-11-24 13:24:48,127 - report.md|jinja - DEBUG - Output is not cached under d781adeca229bf3c204d4559e7142f82, running...
2012-11-24 13:24:48,128 - report.md|jinja - DEBUG - setting up wd for report.md|jinja. exists already: artifacts/d781adeca229bf3c204d4559e7142f82/
2012-11-24 13:24:48,129 - report.md|jinja - DEBUG - setting up jinja FileSystemLoader with dirs ., artifacts/d781adeca229bf3c204d4559e7142f82/, artifacts/d781adeca229bf3c204d4559e7142f82
2012-11-24 13:24:48,130 - report.md|jinja - DEBUG - setting up jinja environment
2012-11-24 13:24:48,130 - report.md|jinja - DEBUG - Creating jinja2 environment with: undefined: <class 'jinja2.runtime.StrictUndefined'>, loader: <jinja2.loaders.FileSystemLoader object at 0x49c1810>
2012-11-24 13:24:48,130 - report.md|jinja - DEBUG - initializing template
2012-11-24 13:24:48,130 - report.md|jinja - DEBUG - Running template plugin PrettyPrintJson
2012-11-24 13:24:48,131 - report.md|jinja - DEBUG - Running template plugin PythonDatetime
2012-11-24 13:24:48,131 - report.md|jinja - DEBUG - Running template plugin DexyVersion
2012-11-24 13:24:48,131 - report.md|jinja - DEBUG - Running template plugin SimpleJson
2012-11-24 13:24:48,131 - report.md|jinja - DEBUG - Running template plugin PrettyPrinter
2012-11-24 13:24:48,132 - report.md|jinja - DEBUG - Running template plugin RegularExpressions
2012-11-24 13:24:48,132 - report.md|jinja - DEBUG - Running template plugin PythonBuiltins
2012-11-24 13:24:48,132 - report.md|jinja - DEBUG - Running template plugin PygmentsStylesheet
2012-11-24 13:24:48,149 - report.md|jinja - DEBUG - Running template plugin Subdirectories
2012-11-24 13:24:48,149 - report.md|jinja - DEBUG - Running template plugin Variables
2012-11-24 13:24:48,150 - report.md|jinja - DEBUG - Running template plugin Globals
2012-11-24 13:24:48,150 - report.md|jinja - DEBUG - Running template plugin Inputs
2012-11-24 13:24:48,150 - report.md|jinja - DEBUG - jinja template data keys are DEXY_VERSION, a, abs, all, any, bin, bool, bytearray, cal, caldates, calendar, callable, chr, cmp, complex, d, datetime, dict, dir, divmod, enumerate, f, filter, float, format, hasattr, hex, highlight, id, int, isinstance, issubclass, iter, json, len, list, long, map, max, min, month, oct, ord, pformat, pow, ppjson, pygments, range, re_match, re_search, reduce, repr, reversed, round, s, set, slice, sorted, str, subdirectories, sum, tc, today, tuple, unicode, w, xrange, year, zip
2012-11-24 13:24:48,151 - report.md|jinja - DEBUG - about to create jinja template
2012-11-24 13:24:48,153 - report.md|jinja - DEBUG - about to process jinja template
2012-11-24 13:24:48,154 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-odt
2012-11-24 13:24:48,154 - report.md|jinja|pandoc - DEBUG - Output is not cached under 5e3fd51d5ca109fcd8ea025ec8812a58, running...
2012-11-24 13:24:48,154 - report.md|jinja|pandoc - DEBUG - setting up wd for report.md|jinja|pandoc. exists already: artifacts/5e3fd51d5ca109fcd8ea025ec8812a58/
2012-11-24 13:24:48,155 - report.md|jinja|pandoc - DEBUG - about to run 'pandoc  report.md -o report.odt' in 'artifacts/5e3fd51d5ca109fcd8ea025ec8812a58/'
2012-11-24 13:24:48,307 - report.md|jinja|pandoc - DEBUG - stdout is ''
2012-11-24 13:24:48,308 - report.md|jinja|pandoc - DEBUG - stderr is ''
2012-11-24 13:24:48,311 - report.md|jinja|pandoc|-odt - DEBUG - Running FilterArtifact:report.md|jinja|pandoc|-odt::Doc:report.md|jinja|pandoc|-odt
2012-11-24 13:24:48,312 - report.md|jinja|pandoc|-odt - DEBUG - Output is not cached under abc9513aa869aba5c54d4f7bd5fb212a, running...
2012-11-24 13:24:48,315 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-epub
2012-11-24 13:24:48,316 - report.md|jinja - DEBUG - Output is not cached under 268ddcdbbb07b992279bfee51f3fc10a, running...
2012-11-24 13:24:48,317 - report.md|jinja - DEBUG - setting up wd for report.md|jinja. exists already: artifacts/268ddcdbbb07b992279bfee51f3fc10a/
2012-11-24 13:24:48,320 - report.md|jinja - DEBUG - setting up jinja FileSystemLoader with dirs ., artifacts/268ddcdbbb07b992279bfee51f3fc10a/, artifacts/268ddcdbbb07b992279bfee51f3fc10a
2012-11-24 13:24:48,321 - report.md|jinja - DEBUG - setting up jinja environment
2012-11-24 13:24:48,321 - report.md|jinja - DEBUG - Creating jinja2 environment with: undefined: <class 'jinja2.runtime.StrictUndefined'>, loader: <jinja2.loaders.FileSystemLoader object at 0x49c1550>
2012-11-24 13:24:48,321 - report.md|jinja - DEBUG - initializing template
2012-11-24 13:24:48,321 - report.md|jinja - DEBUG - Running template plugin PrettyPrintJson
2012-11-24 13:24:48,322 - report.md|jinja - DEBUG - Running template plugin PythonDatetime
2012-11-24 13:24:48,322 - report.md|jinja - DEBUG - Running template plugin DexyVersion
2012-11-24 13:24:48,322 - report.md|jinja - DEBUG - Running template plugin SimpleJson
2012-11-24 13:24:48,322 - report.md|jinja - DEBUG - Running template plugin PrettyPrinter
2012-11-24 13:24:48,322 - report.md|jinja - DEBUG - Running template plugin RegularExpressions
2012-11-24 13:24:48,323 - report.md|jinja - DEBUG - Running template plugin PythonBuiltins
2012-11-24 13:24:48,323 - report.md|jinja - DEBUG - Running template plugin PygmentsStylesheet
2012-11-24 13:24:48,339 - report.md|jinja - DEBUG - Running template plugin Subdirectories
2012-11-24 13:24:48,340 - report.md|jinja - DEBUG - Running template plugin Variables
2012-11-24 13:24:48,340 - report.md|jinja - DEBUG - Running template plugin Globals
2012-11-24 13:24:48,340 - report.md|jinja - DEBUG - Running template plugin Inputs
2012-11-24 13:24:48,341 - report.md|jinja - DEBUG - jinja template data keys are DEXY_VERSION, a, abs, all, any, bin, bool, bytearray, cal, caldates, calendar, callable, chr, cmp, complex, d, datetime, dict, dir, divmod, enumerate, f, filter, float, format, hasattr, hex, highlight, id, int, isinstance, issubclass, iter, json, len, list, long, map, max, min, month, oct, ord, pformat, pow, ppjson, pygments, range, re_match, re_search, reduce, repr, reversed, round, s, set, slice, sorted, str, subdirectories, sum, tc, today, tuple, unicode, w, xrange, year, zip
2012-11-24 13:24:48,341 - report.md|jinja - DEBUG - about to create jinja template
2012-11-24 13:24:48,343 - report.md|jinja - DEBUG - about to process jinja template
2012-11-24 13:24:48,344 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-epub
2012-11-24 13:24:48,344 - report.md|jinja|pandoc - DEBUG - Output is not cached under b27f64993498e575dfb34cb451b98a60, running...
2012-11-24 13:24:48,345 - report.md|jinja|pandoc - DEBUG - setting up wd for report.md|jinja|pandoc. exists already: artifacts/b27f64993498e575dfb34cb451b98a60/
2012-11-24 13:24:48,345 - report.md|jinja|pandoc - DEBUG - about to run 'pandoc  report.md -o report.epub' in 'artifacts/b27f64993498e575dfb34cb451b98a60/'
2012-11-24 13:24:48,528 - report.md|jinja|pandoc - DEBUG - stdout is ''
2012-11-24 13:24:48,528 - report.md|jinja|pandoc - DEBUG - stderr is ''
2012-11-24 13:24:48,529 - report.md|jinja|pandoc|-epub - DEBUG - Running FilterArtifact:report.md|jinja|pandoc|-epub::Doc:report.md|jinja|pandoc|-epub
2012-11-24 13:24:48,529 - report.md|jinja|pandoc|-epub - DEBUG - Output is not cached under 9f6b0ac9c642cc52dcb00a5996eec4ba, running...
2012-11-24 13:24:48,530 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-pdf
2012-11-24 13:24:48,530 - report.md|jinja - DEBUG - Output is not cached under b93ce2270e0bca12beabeb94273e155c, running...
2012-11-24 13:24:48,531 - report.md|jinja - DEBUG - setting up wd for report.md|jinja. exists already: artifacts/b93ce2270e0bca12beabeb94273e155c/
2012-11-24 13:24:48,532 - report.md|jinja - DEBUG - setting up jinja FileSystemLoader with dirs ., artifacts/b93ce2270e0bca12beabeb94273e155c/, artifacts/b93ce2270e0bca12beabeb94273e155c
2012-11-24 13:24:48,532 - report.md|jinja - DEBUG - setting up jinja environment
2012-11-24 13:24:48,532 - report.md|jinja - DEBUG - Creating jinja2 environment with: undefined: <class 'jinja2.runtime.StrictUndefined'>, loader: <jinja2.loaders.FileSystemLoader object at 0x4b24710>
2012-11-24 13:24:48,533 - report.md|jinja - DEBUG - initializing template
2012-11-24 13:24:48,533 - report.md|jinja - DEBUG - Running template plugin PrettyPrintJson
2012-11-24 13:24:48,533 - report.md|jinja - DEBUG - Running template plugin PythonDatetime
2012-11-24 13:24:48,533 - report.md|jinja - DEBUG - Running template plugin DexyVersion
2012-11-24 13:24:48,534 - report.md|jinja - DEBUG - Running template plugin SimpleJson
2012-11-24 13:24:48,534 - report.md|jinja - DEBUG - Running template plugin PrettyPrinter
2012-11-24 13:24:48,534 - report.md|jinja - DEBUG - Running template plugin RegularExpressions
2012-11-24 13:24:48,534 - report.md|jinja - DEBUG - Running template plugin PythonBuiltins
2012-11-24 13:24:48,535 - report.md|jinja - DEBUG - Running template plugin PygmentsStylesheet
2012-11-24 13:24:48,551 - report.md|jinja - DEBUG - Running template plugin Subdirectories
2012-11-24 13:24:48,552 - report.md|jinja - DEBUG - Running template plugin Variables
2012-11-24 13:24:48,552 - report.md|jinja - DEBUG - Running template plugin Globals
2012-11-24 13:24:48,552 - report.md|jinja - DEBUG - Running template plugin Inputs
2012-11-24 13:24:48,553 - report.md|jinja - DEBUG - jinja template data keys are DEXY_VERSION, a, abs, all, any, bin, bool, bytearray, cal, caldates, calendar, callable, chr, cmp, complex, d, datetime, dict, dir, divmod, enumerate, f, filter, float, format, hasattr, hex, highlight, id, int, isinstance, issubclass, iter, json, len, list, long, map, max, min, month, oct, ord, pformat, pow, ppjson, pygments, range, re_match, re_search, reduce, repr, reversed, round, s, set, slice, sorted, str, subdirectories, sum, tc, today, tuple, unicode, w, xrange, year, zip
2012-11-24 13:24:48,553 - report.md|jinja - DEBUG - about to create jinja template
2012-11-24 13:24:48,555 - report.md|jinja - DEBUG - about to process jinja template
2012-11-24 13:24:48,556 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-pdf
2012-11-24 13:24:48,556 - report.md|jinja|pandoc - DEBUG - Output is not cached under 9a2ebc0b68c10b24f3373072e135983a, running...
2012-11-24 13:24:48,557 - report.md|jinja|pandoc - DEBUG - setting up wd for report.md|jinja|pandoc. exists already: artifacts/9a2ebc0b68c10b24f3373072e135983a/
2012-11-24 13:24:48,558 - report.md|jinja|pandoc - DEBUG - about to run 'pandoc  report.md -o report.pdf' in 'artifacts/9a2ebc0b68c10b24f3373072e135983a/'
2012-11-24 13:24:49,677 - report.md|jinja|pandoc - DEBUG - stdout is ''
2012-11-24 13:24:49,677 - report.md|jinja|pandoc - DEBUG - stderr is ''
2012-11-24 13:24:49,678 - report.md|jinja|pandoc|-pdf - DEBUG - Running FilterArtifact:report.md|jinja|pandoc|-pdf::Doc:report.md|jinja|pandoc|-pdf
2012-11-24 13:24:49,678 - report.md|jinja|pandoc|-pdf - DEBUG - Output is not cached under dd20b3681eff2a48ec03888ef2adfc12, running...
2012-11-24 13:24:49,679 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-docx
2012-11-24 13:24:49,679 - report.md|jinja - DEBUG - Output is not cached under f143a1cc23ee4ca0350b69101644bfe2, running...
2012-11-24 13:24:49,680 - report.md|jinja - DEBUG - setting up wd for report.md|jinja. exists already: artifacts/f143a1cc23ee4ca0350b69101644bfe2/
2012-11-24 13:24:49,681 - report.md|jinja - DEBUG - setting up jinja FileSystemLoader with dirs ., artifacts/f143a1cc23ee4ca0350b69101644bfe2/, artifacts/f143a1cc23ee4ca0350b69101644bfe2
2012-11-24 13:24:49,681 - report.md|jinja - DEBUG - setting up jinja environment
2012-11-24 13:24:49,681 - report.md|jinja - DEBUG - Creating jinja2 environment with: undefined: <class 'jinja2.runtime.StrictUndefined'>, loader: <jinja2.loaders.FileSystemLoader object at 0x4b24890>
2012-11-24 13:24:49,682 - report.md|jinja - DEBUG - initializing template
2012-11-24 13:24:49,682 - report.md|jinja - DEBUG - Running template plugin PrettyPrintJson
2012-11-24 13:24:49,682 - report.md|jinja - DEBUG - Running template plugin PythonDatetime
2012-11-24 13:24:49,682 - report.md|jinja - DEBUG - Running template plugin DexyVersion
2012-11-24 13:24:49,683 - report.md|jinja - DEBUG - Running template plugin SimpleJson
2012-11-24 13:24:49,683 - report.md|jinja - DEBUG - Running template plugin PrettyPrinter
2012-11-24 13:24:49,683 - report.md|jinja - DEBUG - Running template plugin RegularExpressions
2012-11-24 13:24:49,683 - report.md|jinja - DEBUG - Running template plugin PythonBuiltins
2012-11-24 13:24:49,683 - report.md|jinja - DEBUG - Running template plugin PygmentsStylesheet
2012-11-24 13:24:49,701 - report.md|jinja - DEBUG - Running template plugin Subdirectories
2012-11-24 13:24:49,701 - report.md|jinja - DEBUG - Running template plugin Variables
2012-11-24 13:24:49,701 - report.md|jinja - DEBUG - Running template plugin Globals
2012-11-24 13:24:49,701 - report.md|jinja - DEBUG - Running template plugin Inputs
2012-11-24 13:24:49,702 - report.md|jinja - DEBUG - jinja template data keys are DEXY_VERSION, a, abs, all, any, bin, bool, bytearray, cal, caldates, calendar, callable, chr, cmp, complex, d, datetime, dict, dir, divmod, enumerate, f, filter, float, format, hasattr, hex, highlight, id, int, isinstance, issubclass, iter, json, len, list, long, map, max, min, month, oct, ord, pformat, pow, ppjson, pygments, range, re_match, re_search, reduce, repr, reversed, round, s, set, slice, sorted, str, subdirectories, sum, tc, today, tuple, unicode, w, xrange, year, zip
2012-11-24 13:24:49,702 - report.md|jinja - DEBUG - about to create jinja template
2012-11-24 13:24:49,704 - report.md|jinja - DEBUG - about to process jinja template
2012-11-24 13:24:49,705 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-docx
2012-11-24 13:24:49,705 - report.md|jinja|pandoc - DEBUG - Output is not cached under 5a19c3f5c58a1f5da222674b87c237ed, running...
2012-11-24 13:24:49,706 - report.md|jinja|pandoc - DEBUG - setting up wd for report.md|jinja|pandoc. exists already: artifacts/5a19c3f5c58a1f5da222674b87c237ed/
2012-11-24 13:24:49,707 - report.md|jinja|pandoc - DEBUG - about to run 'pandoc  report.md -o report.docx' in 'artifacts/5a19c3f5c58a1f5da222674b87c237ed/'
2012-11-24 13:24:49,834 - report.md|jinja|pandoc - DEBUG - stdout is ''
2012-11-24 13:24:49,834 - report.md|jinja|pandoc - DEBUG - stderr is ''
2012-11-24 13:24:49,866 - report.md|jinja|pandoc|-docx - DEBUG - Running FilterArtifact:report.md|jinja|pandoc|-docx::Doc:report.md|jinja|pandoc|-docx
2012-11-24 13:24:49,866 - report.md|jinja|pandoc|-docx - DEBUG - Output is not cached under de75484514388939aa97dd3f00993cb4, running...
2012-11-24 13:24:50,095 - dexy - DEBUG - initializing all reporters where ALLREPORTS is True
2012-11-24 13:24:50,096 - dexy - DEBUG - running reporter output
2012-11-24 13:24:50,111 - report:output - DEBUG - writing report.md|jinja|pandoc to output/report.html
2012-11-24 13:24:50,113 - report:output - DEBUG - writing report.md|jinja|pandoc|-odt to output/report.odt
2012-11-24 13:24:50,115 - report:output - DEBUG - writing report.md|jinja|pandoc|-epub to output/report.epub
2012-11-24 13:24:50,116 - report:output - DEBUG - writing report.md|jinja|pandoc|-pdf to output/report.pdf
2012-11-24 13:24:50,118 - report:output - DEBUG - writing report.md|jinja|pandoc|-docx to output/report.docx
2012-11-24 13:24:50,119 - report:output - DEBUG - writing example.txt to output/example.txt
2012-11-24 13:24:50,120 - report:output - DEBUG - writing plot.png to output/plot.png
2012-11-24 13:24:50,120 - report:output - DEBUG - writing storage.json to output/storage.json
2012-11-24 13:24:50,121 - dexy - DEBUG - running reporter long
2012-11-24 13:24:50,132 - report:long - DEBUG - writing example.R|rout to output-long/example.R-rout.txt
2012-11-24 13:24:50,132 - report:long - DEBUG - writing report.md|jinja|pandoc to output-long/report.md-jinja-pandoc.html
2012-11-24 13:24:50,132 - report:long - DEBUG - writing report.md|jinja|pandoc|-odt to output-long/report.md-jinja-pandoc--odt.odt
2012-11-24 13:24:50,132 - report:long - DEBUG - writing report.md|jinja|pandoc|-epub to output-long/report.md-jinja-pandoc--epub.epub
2012-11-24 13:24:50,133 - report:long - DEBUG - writing report.md|jinja|pandoc|-pdf to output-long/report.md-jinja-pandoc--pdf.pdf
2012-11-24 13:24:50,133 - report:long - DEBUG - writing report.md|jinja|pandoc|-docx to output-long/report.md-jinja-pandoc--docx.docx
2012-11-24 13:24:50,133 - report:long - DEBUG - writing example.txt to output-long/example.txt
2012-11-24 13:24:50,133 - report:long - DEBUG - writing plot.png to output-long/plot.png
2012-11-24 13:24:50,134 - report:long - DEBUG - writing storage.json to output-long/storage.json
2012-11-24 13:24:50,134 - dexy - DEBUG - running reporter run
2012-11-24 13:38:43,745 - dexy - DEBUG - looking for doc config files in '.'
2012-11-24 13:38:43,746 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-24 13:38:43,746 - dexy - DEBUG -   skipping directory './artifacts' because it matches exclude 'artifacts'
2012-11-24 13:38:43,746 - dexy - DEBUG -   skipping directory './logs' because it matches exclude 'logs'
2012-11-24 13:38:43,746 - dexy - DEBUG -   skipping directory './output' because it matches exclude 'output'
2012-11-24 13:38:43,746 - dexy - DEBUG -   skipping directory './output-long' because it matches exclude 'output-long'
2012-11-24 13:38:43,746 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-24 13:38:43,746 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-24 13:38:43,746 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-24 13:38:43,746 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-24 13:38:43,746 - dexy - DEBUG - found doc config file './dexy.yaml':
code:
    - .R|rout

.md|jinja|pandoc:
    - code

.md|jinja|pandoc|-odt:
    - pandoc: { ext : .odt }
    - code

.md|jinja|pandoc|-pdf:
    - pandoc: { ext : .pdf }
    - code

.md|jinja|pandoc|-docx:
    - pandoc: { ext : .docx }
    - code

.md|jinja|pandoc|-epub:
    - pandoc: { ext : .epub }
    - code

.md|jinja|pandoc|calibre:
    - code

2012-11-24 13:38:43,751 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc'
2012-11-24 13:38:43,751 - dexy - DEBUG - treating code as a bundle name, not prepending directory .
2012-11-24 13:38:43,751 - dexy - DEBUG - adding dependency of 'pattern:*.R|rout' on 'bundle:code'
2012-11-24 13:38:43,751 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc|calibre'
2012-11-24 13:38:43,751 - dexy - DEBUG - adding task info for 'pattern:*.md|jinja|pandoc|-odt'
2012-11-24 13:38:43,751 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc|-odt'
2012-11-24 13:38:43,752 - dexy - DEBUG - adding task info for 'pattern:*.md|jinja|pandoc|-epub'
2012-11-24 13:38:43,752 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc|-epub'
2012-11-24 13:38:43,752 - dexy - DEBUG - adding task info for 'pattern:*.md|jinja|pandoc|-pdf'
2012-11-24 13:38:43,752 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc|-pdf'
2012-11-24 13:38:43,752 - dexy - DEBUG - adding task info for 'pattern:*.md|jinja|pandoc|-docx'
2012-11-24 13:38:43,752 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc|-docx'
2012-11-24 13:38:43,752 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-24 13:38:43,753 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-24 13:38:43,753 - dexy - DEBUG - AST completed:
2012-11-24 13:38:43,754 - dexy - DEBUG - tree:
  pattern:*.md|jinja|pandoc
  pattern:*.md|jinja|pandoc|calibre
  pattern:*.md|jinja|pandoc|-odt
  pattern:*.md|jinja|pandoc|-epub
  pattern:*.md|jinja|pandoc|-pdf
  pattern:*.md|jinja|pandoc|-docx
lookup table:
    pattern:*.md|jinja|pandoc|-docx: {'children': ['bundle:code'], 'pandoc': {'ext': '.docx'}}
    bundle:code: {'children': ['pattern:*.R|rout']}
    pattern:*.md|jinja|pandoc|-epub: {'children': ['bundle:code'], 'pandoc': {'ext': '.epub'}}
    pattern:*.md|jinja|pandoc|calibre: {'children': ['bundle:code']}
    pattern:*.md|jinja|pandoc|-odt: {'children': ['bundle:code'], 'pandoc': {'ext': '.odt'}}
    pattern:*.md|jinja|pandoc|-pdf: {'children': ['bundle:code'], 'pandoc': {'ext': '.pdf'}}
    pattern:*.md|jinja|pandoc: {'children': ['bundle:code']}
    pattern:*.R|rout: {'children': []}
2012-11-24 13:38:43,754 - dexy - DEBUG - walking AST:
2012-11-24 13:38:43,754 - dexy - DEBUG - Creating task 'pattern:*.R|rout' with children '()' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x46271d0>}'
2012-11-24 13:38:43,754 - dexy - DEBUG - Creating task 'bundle:code' with children '(PatternDoc:*.R|rout,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x46271d0>}'
2012-11-24 13:38:43,754 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x46271d0>}'
2012-11-24 13:38:43,754 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc|calibre' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x46271d0>}'
2012-11-24 13:38:43,755 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc|-odt' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x46271d0>, 'pandoc': {'ext': '.odt'}}'
2012-11-24 13:38:43,755 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc|-epub' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x46271d0>, 'pandoc': {'ext': '.epub'}}'
2012-11-24 13:38:43,755 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc|-pdf' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x46271d0>, 'pandoc': {'ext': '.pdf'}}'
2012-11-24 13:38:43,755 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc|-docx' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x46271d0>, 'pandoc': {'ext': '.docx'}}'
2012-11-24 13:38:43,756 - dexy - DEBUG - batch id is 1004
2012-11-24 13:38:43,756 - dexy - DEBUG - running dexy with config:
2012-11-24 13:38:43,756 - dexy - DEBUG -   artifacts_dir: artifacts
2012-11-24 13:38:43,756 - dexy - DEBUG -   batch_id: 1004
2012-11-24 13:38:43,756 - dexy - DEBUG -   batch_info: {'start_time': 1353793123.755673}
2012-11-24 13:38:43,756 - dexy - DEBUG -   config_file: dexy.conf
2012-11-24 13:38:43,756 - dexy - DEBUG -   danger: False
2012-11-24 13:38:43,756 - dexy - DEBUG -   db_alias: sqlite3
2012-11-24 13:38:43,757 - dexy - DEBUG -   db_file: dexy.sqlite3
2012-11-24 13:38:43,757 - dexy - DEBUG -   disable_tests: False
2012-11-24 13:38:43,757 - dexy - DEBUG -   doc_config: OrderedDict([('.', 'code:\n    - .R|rout\n\n.md|jinja|pandoc:\n    - code\n\n.md|jinja|pandoc|-odt:\n    - pandoc: { ext : .odt }\n    - code\n\n.md|jinja|pandoc|-pdf:\n    - pandoc: { ext : .pdf }\n    - code\n\n.md|jinja|pandoc|-docx:\n    - pandoc: { ext : .docx }\n    - code\n\n.md|jinja|pandoc|-epub:\n    - pandoc: { ext : .epub }\n    - code\n\n.md|jinja|pandoc|calibre:\n    - code\n')])
2012-11-24 13:38:43,757 - dexy - DEBUG -   dont_use_cache: False
2012-11-24 13:38:43,757 - dexy - DEBUG -   dry_run: False
2012-11-24 13:38:43,757 - dexy - DEBUG -   exclude: .git, .svn, tmp, cache
2012-11-24 13:38:43,757 - dexy - DEBUG -   exclude_also: 
2012-11-24 13:38:43,757 - dexy - DEBUG -   globals: 
2012-11-24 13:38:43,757 - dexy - DEBUG -   hashfunction: md5
2012-11-24 13:38:43,757 - dexy - DEBUG -   ignore_nonzero_exit: False
2012-11-24 13:38:43,757 - dexy - DEBUG -   log_dir: logs
2012-11-24 13:38:43,757 - dexy - DEBUG -   log_file: dexy.log
2012-11-24 13:38:43,758 - dexy - DEBUG -   log_format: %(asctime)s - %(name)s - %(levelname)s - %(message)s
2012-11-24 13:38:43,758 - dexy - DEBUG -   log_level: DEBUG
2012-11-24 13:38:43,758 - dexy - DEBUG -   platform_system: Linux
2012-11-24 13:38:43,758 - dexy - DEBUG -   profile: False
2012-11-24 13:38:43,758 - dexy - DEBUG -   recurse: True
2012-11-24 13:38:43,758 - dexy - DEBUG -   reports: 
2012-11-24 13:38:43,758 - dexy - DEBUG -   siblings: False
2012-11-24 13:38:43,758 - dexy - DEBUG -   silent: False
2012-11-24 13:38:43,758 - dexy - DEBUG -   state: None
2012-11-24 13:38:43,758 - dexy - DEBUG -   target: False
2012-11-24 13:38:43,758 - dexy - DEBUG -   uselocals: False
2012-11-24 13:38:43,759 - *.R|rout - DEBUG - creating child of patterndoc *.R|rout: example.R|rout
2012-11-24 13:38:43,760 - *.md|jinja|pandoc - DEBUG - creating child of patterndoc *.md|jinja|pandoc: report.md|jinja|pandoc
2012-11-24 13:38:43,760 - example.R - DEBUG - Setting up InitialArtifact:example.R::Doc:example.R|rout
2012-11-24 13:38:43,761 - example.R - DEBUG - Setting hashstring for example.R to 37efdae66ef5056d41883121456b3c86
2012-11-24 13:38:43,761 - example.R - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:43,761 - dexy - DEBUG - Creating new notification channel 'newchild'
2012-11-24 13:38:43,761 - example.R|rout - DEBUG - Setting up FilterArtifact:example.R|rout::Doc:example.R|rout
2012-11-24 13:38:43,782 - example.R|rout - DEBUG - Setting hashstring for example.R|rout to db00c9d7c68b1858edb98ddfff3140fb
2012-11-24 13:38:43,783 - example.R|rout - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:43,784 - *.md|jinja|pandoc|calibre - DEBUG - creating child of patterndoc *.md|jinja|pandoc|calibre: report.md|jinja|pandoc|calibre
2012-11-24 13:38:43,788 - *.md|jinja|pandoc|-odt - DEBUG - creating child of patterndoc *.md|jinja|pandoc|-odt: report.md|jinja|pandoc|-odt
2012-11-24 13:38:43,790 - *.md|jinja|pandoc|-epub - DEBUG - creating child of patterndoc *.md|jinja|pandoc|-epub: report.md|jinja|pandoc|-epub
2012-11-24 13:38:43,793 - *.md|jinja|pandoc|-pdf - DEBUG - creating child of patterndoc *.md|jinja|pandoc|-pdf: report.md|jinja|pandoc|-pdf
2012-11-24 13:38:43,796 - *.md|jinja|pandoc|-docx - DEBUG - creating child of patterndoc *.md|jinja|pandoc|-docx: report.md|jinja|pandoc|-docx
2012-11-24 13:38:43,797 - report.md - DEBUG - Setting up InitialArtifact:report.md::Doc:report.md|jinja|pandoc
2012-11-24 13:38:43,797 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-24 13:38:43,797 - report.md - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:43,797 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc
2012-11-24 13:38:43,798 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to 3b51ad54d83e46c731e15d04028b1298
2012-11-24 13:38:43,798 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:43,798 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc
2012-11-24 13:38:43,812 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to 56ee4f9438b2be075327e5126137ce95
2012-11-24 13:38:43,813 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:43,815 - report.md - DEBUG - Setting up InitialArtifact:report.md::Doc:report.md|jinja|pandoc|calibre
2012-11-24 13:38:43,815 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-24 13:38:43,815 - report.md - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:43,816 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|calibre
2012-11-24 13:38:43,818 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to bd583aed7fddb0942175f09553c8d9da
2012-11-24 13:38:43,818 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:43,819 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|calibre
2012-11-24 13:38:43,836 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to aa79acb1dcf9be1344c44222c137cea5
2012-11-24 13:38:43,838 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:43,839 - report.md|jinja|pandoc|calibre - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc|calibre::Doc:report.md|jinja|pandoc|calibre
2012-11-24 13:38:43,978 - report.md|jinja|pandoc|calibre - DEBUG - Setting hashstring for report.md|jinja|pandoc|calibre to 9b02bc4cfa7041614012c0435749c375
2012-11-24 13:38:43,979 - report.md|jinja|pandoc|calibre - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:43,981 - report.md - DEBUG - Setting up InitialArtifact:report.md::Doc:report.md|jinja|pandoc|-odt
2012-11-24 13:38:43,981 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-24 13:38:43,982 - report.md - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:43,983 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-odt
2012-11-24 13:38:43,986 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to d781adeca229bf3c204d4559e7142f82
2012-11-24 13:38:43,987 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:43,988 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-odt
2012-11-24 13:38:44,002 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to 5e3fd51d5ca109fcd8ea025ec8812a58
2012-11-24 13:38:44,004 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:44,005 - report.md|jinja|pandoc|-odt - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc|-odt::Doc:report.md|jinja|pandoc|-odt
2012-11-24 13:38:44,007 - report.md|jinja|pandoc|-odt - DEBUG - Setting hashstring for report.md|jinja|pandoc|-odt to abc9513aa869aba5c54d4f7bd5fb212a
2012-11-24 13:38:44,008 - report.md|jinja|pandoc|-odt - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:44,009 - report.md - DEBUG - Setting up InitialArtifact:report.md::Doc:report.md|jinja|pandoc|-epub
2012-11-24 13:38:44,010 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-24 13:38:44,010 - report.md - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:44,011 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-epub
2012-11-24 13:38:44,013 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to 268ddcdbbb07b992279bfee51f3fc10a
2012-11-24 13:38:44,013 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:44,013 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-epub
2012-11-24 13:38:44,027 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to b27f64993498e575dfb34cb451b98a60
2012-11-24 13:38:44,033 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:44,035 - report.md|jinja|pandoc|-epub - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc|-epub::Doc:report.md|jinja|pandoc|-epub
2012-11-24 13:38:44,037 - report.md|jinja|pandoc|-epub - DEBUG - Setting hashstring for report.md|jinja|pandoc|-epub to 9f6b0ac9c642cc52dcb00a5996eec4ba
2012-11-24 13:38:44,038 - report.md|jinja|pandoc|-epub - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:44,039 - report.md - DEBUG - Setting up InitialArtifact:report.md::Doc:report.md|jinja|pandoc|-pdf
2012-11-24 13:38:44,040 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-24 13:38:44,041 - report.md - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:44,042 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-pdf
2012-11-24 13:38:44,045 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to b93ce2270e0bca12beabeb94273e155c
2012-11-24 13:38:44,046 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:44,047 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-pdf
2012-11-24 13:38:44,062 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to 9a2ebc0b68c10b24f3373072e135983a
2012-11-24 13:38:44,064 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:44,065 - report.md|jinja|pandoc|-pdf - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc|-pdf::Doc:report.md|jinja|pandoc|-pdf
2012-11-24 13:38:44,067 - report.md|jinja|pandoc|-pdf - DEBUG - Setting hashstring for report.md|jinja|pandoc|-pdf to dd20b3681eff2a48ec03888ef2adfc12
2012-11-24 13:38:44,068 - report.md|jinja|pandoc|-pdf - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:44,069 - report.md - DEBUG - Setting up InitialArtifact:report.md::Doc:report.md|jinja|pandoc|-docx
2012-11-24 13:38:44,070 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-24 13:38:44,071 - report.md - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:44,072 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-docx
2012-11-24 13:38:44,074 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to f143a1cc23ee4ca0350b69101644bfe2
2012-11-24 13:38:44,076 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:44,077 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-docx
2012-11-24 13:38:44,094 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to 5a19c3f5c58a1f5da222674b87c237ed
2012-11-24 13:38:44,096 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:44,098 - report.md|jinja|pandoc|-docx - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc|-docx::Doc:report.md|jinja|pandoc|-docx
2012-11-24 13:38:44,100 - report.md|jinja|pandoc|-docx - DEBUG - Setting hashstring for report.md|jinja|pandoc|-docx to de75484514388939aa97dd3f00993cb4
2012-11-24 13:38:44,100 - report.md|jinja|pandoc|-docx - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:44,103 - example.R|rout - DEBUG - Running FilterArtifact:example.R|rout::Doc:example.R|rout
2012-11-24 13:38:44,103 - example.R|rout - DEBUG - Output is cached under db00c9d7c68b1858edb98ddfff3140fb, reconstituting...
2012-11-24 13:38:44,105 - example.R|rout - DEBUG - Reconstituting example.txt from database and cache
2012-11-24 13:38:44,106 - example.R|rout - DEBUG - adding additional doc example.txt (created by example.R|rout)
2012-11-24 13:38:44,107 - example.txt - DEBUG - Setting up InitialVirtualArtifact:example.txt::Doc:example.txt
2012-11-24 13:38:44,108 - example.txt - DEBUG - Setting hashstring for example.txt to 67ca147287010eee7af5529b040a79ab
2012-11-24 13:38:44,108 - example.txt - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:44,109 - example.R|rout - DEBUG - Reconstituting example.txt from database and cache
2012-11-24 13:38:44,109 - example.R|rout - DEBUG - Reconstituting plot.png from database and cache
2012-11-24 13:38:44,109 - example.R|rout - DEBUG - adding additional doc plot.png (created by example.R|rout)
2012-11-24 13:38:44,109 - plot.png - DEBUG - Setting up InitialVirtualArtifact:plot.png::Doc:plot.png
2012-11-24 13:38:44,109 - plot.png - DEBUG - Setting hashstring for plot.png to 2fcd6e22786b435da431867dbef1647e
2012-11-24 13:38:44,110 - plot.png - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:44,110 - example.R|rout - DEBUG - Reconstituting plot.png from database and cache
2012-11-24 13:38:44,110 - example.R|rout - DEBUG - Reconstituting storage.json from database and cache
2012-11-24 13:38:44,110 - example.R|rout - DEBUG - adding additional doc storage.json (created by example.R|rout)
2012-11-24 13:38:44,111 - storage.json - DEBUG - Setting up InitialVirtualArtifact:storage.json::Doc:storage.json
2012-11-24 13:38:44,111 - storage.json - DEBUG - Setting hashstring for storage.json to dcebc4433e4a66776a1573a5bc232c98
2012-11-24 13:38:44,111 - storage.json - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:44,111 - example.R|rout - DEBUG - Reconstituting storage.json from database and cache
2012-11-24 13:38:44,112 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc
2012-11-24 13:38:44,113 - report.md|jinja - DEBUG - Output is cached under 3b51ad54d83e46c731e15d04028b1298, reconstituting...
2012-11-24 13:38:44,113 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc
2012-11-24 13:38:44,113 - report.md|jinja|pandoc - DEBUG - Output is cached under 56ee4f9438b2be075327e5126137ce95, reconstituting...
2012-11-24 13:38:44,114 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|calibre
2012-11-24 13:38:44,115 - report.md|jinja - DEBUG - Output is not cached under bd583aed7fddb0942175f09553c8d9da, running...
2012-11-24 13:38:44,115 - report.md|jinja - DEBUG - setting up wd for report.md|jinja. exists already: artifacts/bd583aed7fddb0942175f09553c8d9da/
2012-11-24 13:38:44,116 - report.md|jinja - DEBUG - setting up jinja FileSystemLoader with dirs ., artifacts/bd583aed7fddb0942175f09553c8d9da/, artifacts/bd583aed7fddb0942175f09553c8d9da
2012-11-24 13:38:44,116 - report.md|jinja - DEBUG - setting up jinja environment
2012-11-24 13:38:44,117 - report.md|jinja - DEBUG - Creating jinja2 environment with: undefined: <class 'jinja2.runtime.StrictUndefined'>, loader: <jinja2.loaders.FileSystemLoader object at 0x468c450>
2012-11-24 13:38:44,117 - report.md|jinja - DEBUG - initializing template
2012-11-24 13:38:44,117 - report.md|jinja - DEBUG - Running template plugin PrettyPrintJson
2012-11-24 13:38:44,118 - report.md|jinja - DEBUG - Running template plugin PythonDatetime
2012-11-24 13:38:44,118 - report.md|jinja - DEBUG - Running template plugin DexyVersion
2012-11-24 13:38:44,118 - report.md|jinja - DEBUG - Running template plugin SimpleJson
2012-11-24 13:38:44,118 - report.md|jinja - DEBUG - Running template plugin PrettyPrinter
2012-11-24 13:38:44,119 - report.md|jinja - DEBUG - Running template plugin RegularExpressions
2012-11-24 13:38:44,119 - report.md|jinja - DEBUG - Running template plugin PythonBuiltins
2012-11-24 13:38:44,119 - report.md|jinja - DEBUG - Running template plugin PygmentsStylesheet
2012-11-24 13:38:44,146 - report.md|jinja - DEBUG - Running template plugin Subdirectories
2012-11-24 13:38:44,146 - report.md|jinja - DEBUG - Running template plugin Variables
2012-11-24 13:38:44,146 - report.md|jinja - DEBUG - Running template plugin Globals
2012-11-24 13:38:44,147 - report.md|jinja - DEBUG - Running template plugin Inputs
2012-11-24 13:38:44,147 - report.md|jinja - DEBUG - jinja template data keys are DEXY_VERSION, a, abs, all, any, bin, bool, bytearray, cal, caldates, calendar, callable, chr, cmp, complex, d, datetime, dict, dir, divmod, enumerate, f, filter, float, format, hasattr, hex, highlight, id, int, isinstance, issubclass, iter, json, len, list, long, map, max, min, month, oct, ord, pformat, pow, ppjson, pygments, range, re_match, re_search, reduce, repr, reversed, round, s, set, slice, sorted, str, subdirectories, sum, tc, today, tuple, unicode, w, xrange, year, zip
2012-11-24 13:38:44,148 - report.md|jinja - DEBUG - about to create jinja template
2012-11-24 13:38:44,151 - report.md|jinja - DEBUG - about to process jinja template
2012-11-24 13:38:44,152 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|calibre
2012-11-24 13:38:44,152 - report.md|jinja|pandoc - DEBUG - Output is not cached under aa79acb1dcf9be1344c44222c137cea5, running...
2012-11-24 13:38:44,153 - report.md|jinja|pandoc - DEBUG - setting up wd for report.md|jinja|pandoc. exists already: artifacts/aa79acb1dcf9be1344c44222c137cea5/
2012-11-24 13:38:44,154 - report.md|jinja|pandoc - DEBUG - about to run 'pandoc  report.md -o report.epub' in 'artifacts/aa79acb1dcf9be1344c44222c137cea5/'
2012-11-24 13:38:44,225 - report.md|jinja|pandoc - DEBUG - stdout is ''
2012-11-24 13:38:44,227 - report.md|jinja|pandoc - DEBUG - stderr is ''
2012-11-24 13:38:44,230 - report.md|jinja|pandoc|calibre - DEBUG - Running FilterArtifact:report.md|jinja|pandoc|calibre::Doc:report.md|jinja|pandoc|calibre
2012-11-24 13:38:44,231 - report.md|jinja|pandoc|calibre - DEBUG - Output is not cached under 9b02bc4cfa7041614012c0435749c375, running...
2012-11-24 13:38:44,233 - report.md|jinja|pandoc|calibre - DEBUG - setting up wd for report.md|jinja|pandoc|calibre. exists already: artifacts/9b02bc4cfa7041614012c0435749c375/
2012-11-24 13:38:44,236 - report.md|jinja|pandoc|calibre - DEBUG - about to run 'ebook-convert report.epub report.mobi ' in 'artifacts/9b02bc4cfa7041614012c0435749c375/'
2012-11-24 13:38:45,964 - report.md|jinja|pandoc|calibre - DEBUG - stdout is '1% Converting input to HTML...
InputFormatPlugin: EPUB Input running
on /home/ana/dev/dexy-templates/dexy_templates/pander-template/artifacts/9b02bc4cfa7041614012c0435749c375/report.epub
Parsing all content...
34% Running transforms on ebook...
Merging user specified metadata...
Detecting structure...
Flattening CSS and remapping font sizes...
Source base font size is 12.00000pt
Removing fake margins...
Cleaning up manifest...
Trimming unused files from manifest...
Creating MOBI Output...
67% Running MOBI Output plugin
Serializing resources...
Creating MOBI 6 output
Generating in-line TOC...
Applying case-transforming CSS...
Rasterizing SVG images...
Converting XHTML to Mobipocket markup...
Serializing markup content...
  Compressing markup content...
Generating MOBI index for a book
MOBI output written to /home/ana/dev/dexy-templates/dexy_templates/pander-template/artifacts/9b02bc4cfa7041614012c0435749c375/report.mobi
Output saved to   /home/ana/dev/dexy-templates/dexy_templates/pander-template/artifacts/9b02bc4cfa7041614012c0435749c375/report.mobi
'
2012-11-24 13:38:45,965 - report.md|jinja|pandoc|calibre - DEBUG - stderr is ''
2012-11-24 13:38:45,966 - report.md|jinja|pandoc|calibre - DEBUG - adding new files found in artifacts/9b02bc4cfa7041614012c0435749c375 for report.md|jinja|pandoc|calibre
2012-11-24 13:38:45,968 - report.md|jinja|pandoc|calibre - DEBUG - adding additional doc report.epub (created by report.md|jinja|pandoc|calibre)
2012-11-24 13:38:45,969 - report.epub - DEBUG - Setting up InitialVirtualArtifact:report.epub::Doc:report.epub
2012-11-24 13:38:45,970 - report.epub - DEBUG - Setting hashstring for report.epub to d4c54c176c65ada9b81bcdee2de44f91
2012-11-24 13:38:45,970 - report.epub - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:45,974 - report.md|jinja|pandoc|calibre - DEBUG - adding additional doc report.mobi (created by report.md|jinja|pandoc|calibre)
2012-11-24 13:38:45,975 - report.mobi - DEBUG - Setting up InitialVirtualArtifact:report.mobi::Doc:report.mobi
2012-11-24 13:38:45,976 - report.mobi - DEBUG - Setting hashstring for report.mobi to 409ac5ee3781b22e159cccc5daa1594c
2012-11-24 13:38:45,976 - report.mobi - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:45,980 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-odt
2012-11-24 13:38:45,981 - report.md|jinja - DEBUG - Output is cached under d781adeca229bf3c204d4559e7142f82, reconstituting...
2012-11-24 13:38:45,981 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-odt
2012-11-24 13:38:45,982 - report.md|jinja|pandoc - DEBUG - Output is cached under 5e3fd51d5ca109fcd8ea025ec8812a58, reconstituting...
2012-11-24 13:38:45,982 - report.md|jinja|pandoc|-odt - DEBUG - Running FilterArtifact:report.md|jinja|pandoc|-odt::Doc:report.md|jinja|pandoc|-odt
2012-11-24 13:38:45,982 - report.md|jinja|pandoc|-odt - DEBUG - Output is cached under abc9513aa869aba5c54d4f7bd5fb212a, reconstituting...
2012-11-24 13:38:45,983 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-epub
2012-11-24 13:38:45,983 - report.md|jinja - DEBUG - Output is cached under 268ddcdbbb07b992279bfee51f3fc10a, reconstituting...
2012-11-24 13:38:45,984 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-epub
2012-11-24 13:38:45,984 - report.md|jinja|pandoc - DEBUG - Output is cached under b27f64993498e575dfb34cb451b98a60, reconstituting...
2012-11-24 13:38:45,985 - report.md|jinja|pandoc|-epub - DEBUG - Running FilterArtifact:report.md|jinja|pandoc|-epub::Doc:report.md|jinja|pandoc|-epub
2012-11-24 13:38:45,985 - report.md|jinja|pandoc|-epub - DEBUG - Output is cached under 9f6b0ac9c642cc52dcb00a5996eec4ba, reconstituting...
2012-11-24 13:38:45,986 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-pdf
2012-11-24 13:38:45,986 - report.md|jinja - DEBUG - Output is cached under b93ce2270e0bca12beabeb94273e155c, reconstituting...
2012-11-24 13:38:45,987 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-pdf
2012-11-24 13:38:45,987 - report.md|jinja|pandoc - DEBUG - Output is cached under 9a2ebc0b68c10b24f3373072e135983a, reconstituting...
2012-11-24 13:38:45,987 - report.md|jinja|pandoc|-pdf - DEBUG - Running FilterArtifact:report.md|jinja|pandoc|-pdf::Doc:report.md|jinja|pandoc|-pdf
2012-11-24 13:38:45,988 - report.md|jinja|pandoc|-pdf - DEBUG - Output is cached under dd20b3681eff2a48ec03888ef2adfc12, reconstituting...
2012-11-24 13:38:45,988 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-docx
2012-11-24 13:38:45,989 - report.md|jinja - DEBUG - Output is cached under f143a1cc23ee4ca0350b69101644bfe2, reconstituting...
2012-11-24 13:38:45,989 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-docx
2012-11-24 13:38:45,990 - report.md|jinja|pandoc - DEBUG - Output is cached under 5a19c3f5c58a1f5da222674b87c237ed, reconstituting...
2012-11-24 13:38:45,990 - report.md|jinja|pandoc|-docx - DEBUG - Running FilterArtifact:report.md|jinja|pandoc|-docx::Doc:report.md|jinja|pandoc|-docx
2012-11-24 13:38:45,990 - report.md|jinja|pandoc|-docx - DEBUG - Output is cached under de75484514388939aa97dd3f00993cb4, reconstituting...
2012-11-24 13:38:46,205 - dexy - DEBUG - initializing all reporters where ALLREPORTS is True
2012-11-24 13:38:46,206 - dexy - DEBUG - running reporter output
2012-11-24 13:38:46,207 - report:output - DEBUG - writing report.md|jinja|pandoc to output/report.html
2012-11-24 13:38:46,208 - report:output - DEBUG - writing report.md|jinja|pandoc|calibre to output/report.mobi
2012-11-24 13:38:46,208 - report:output - DEBUG - writing report.md|jinja|pandoc|-odt to output/report.odt
2012-11-24 13:38:46,209 - report:output - DEBUG - writing report.md|jinja|pandoc|-epub to output/report.epub
2012-11-24 13:38:46,209 - report:output - DEBUG - writing report.md|jinja|pandoc|-pdf to output/report.pdf
2012-11-24 13:38:46,209 - report:output - DEBUG - writing report.md|jinja|pandoc|-docx to output/report.docx
2012-11-24 13:38:46,210 - report:output - DEBUG - writing example.txt to output/example.txt
2012-11-24 13:38:46,210 - report:output - DEBUG - writing plot.png to output/plot.png
2012-11-24 13:38:46,210 - report:output - DEBUG - writing storage.json to output/storage.json
2012-11-24 13:38:46,210 - report:output - DEBUG - writing report.epub to output/report.epub
2012-11-24 13:38:46,211 - report:output - DEBUG - writing report.mobi to output/report.mobi
2012-11-24 13:38:46,211 - dexy - DEBUG - running reporter long
2012-11-24 13:38:46,212 - report:long - DEBUG - writing example.R|rout to output-long/example.R-rout.txt
2012-11-24 13:38:46,212 - report:long - DEBUG - writing report.md|jinja|pandoc to output-long/report.md-jinja-pandoc.html
2012-11-24 13:38:46,212 - report:long - DEBUG - writing report.md|jinja|pandoc|calibre to output-long/report.md-jinja-pandoc-calibre.mobi
2012-11-24 13:38:46,212 - report:long - DEBUG - writing report.md|jinja|pandoc|-odt to output-long/report.md-jinja-pandoc--odt.odt
2012-11-24 13:38:46,213 - report:long - DEBUG - writing report.md|jinja|pandoc|-epub to output-long/report.md-jinja-pandoc--epub.epub
2012-11-24 13:38:46,213 - report:long - DEBUG - writing report.md|jinja|pandoc|-pdf to output-long/report.md-jinja-pandoc--pdf.pdf
2012-11-24 13:38:46,213 - report:long - DEBUG - writing report.md|jinja|pandoc|-docx to output-long/report.md-jinja-pandoc--docx.docx
2012-11-24 13:38:46,213 - report:long - DEBUG - writing example.txt to output-long/example.txt
2012-11-24 13:38:46,214 - report:long - DEBUG - writing plot.png to output-long/plot.png
2012-11-24 13:38:46,214 - report:long - DEBUG - writing storage.json to output-long/storage.json
2012-11-24 13:38:46,214 - report:long - DEBUG - writing report.epub to output-long/report.epub
2012-11-24 13:38:46,214 - report:long - DEBUG - writing report.mobi to output-long/report.mobi
2012-11-24 13:38:46,215 - dexy - DEBUG - running reporter run
2012-11-24 13:38:59,875 - dexy - DEBUG - looking for doc config files in '.'
2012-11-24 13:38:59,875 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-24 13:38:59,875 - dexy - DEBUG -   skipping directory './artifacts' because it matches exclude 'artifacts'
2012-11-24 13:38:59,875 - dexy - DEBUG -   skipping directory './logs' because it matches exclude 'logs'
2012-11-24 13:38:59,875 - dexy - DEBUG -   skipping directory './output' because it matches exclude 'output'
2012-11-24 13:38:59,875 - dexy - DEBUG -   skipping directory './output-long' because it matches exclude 'output-long'
2012-11-24 13:38:59,875 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-24 13:38:59,876 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-24 13:38:59,876 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-24 13:38:59,876 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-24 13:38:59,876 - dexy - DEBUG - found doc config file './dexy.yaml':
code:
    - .R|rout

.md|jinja|pandoc:
    - code

.md|jinja|pandoc|-odt:
    - pandoc: { ext : .odt }
    - code

.md|jinja|pandoc|-pdf:
    - pandoc: { ext : .pdf }
    - code

.md|jinja|pandoc|-docx:
    - pandoc: { ext : .docx }
    - code

.md|jinja|pandoc|-epub:
    - pandoc: { ext : .epub }
    - code

.md|jinja|pandoc|calibre:
    - code

2012-11-24 13:38:59,881 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc'
2012-11-24 13:38:59,882 - dexy - DEBUG - treating code as a bundle name, not prepending directory .
2012-11-24 13:38:59,882 - dexy - DEBUG - adding dependency of 'pattern:*.R|rout' on 'bundle:code'
2012-11-24 13:38:59,882 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc|calibre'
2012-11-24 13:38:59,882 - dexy - DEBUG - adding task info for 'pattern:*.md|jinja|pandoc|-odt'
2012-11-24 13:38:59,882 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc|-odt'
2012-11-24 13:38:59,882 - dexy - DEBUG - adding task info for 'pattern:*.md|jinja|pandoc|-epub'
2012-11-24 13:38:59,882 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc|-epub'
2012-11-24 13:38:59,883 - dexy - DEBUG - adding task info for 'pattern:*.md|jinja|pandoc|-pdf'
2012-11-24 13:38:59,883 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc|-pdf'
2012-11-24 13:38:59,883 - dexy - DEBUG - adding task info for 'pattern:*.md|jinja|pandoc|-docx'
2012-11-24 13:38:59,883 - dexy - DEBUG - adding dependency of 'bundle:code' on 'pattern:*.md|jinja|pandoc|-docx'
2012-11-24 13:38:59,883 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-24 13:38:59,883 - dexy - DEBUG - Removing any child directories of '.' that match excludes...
2012-11-24 13:38:59,883 - dexy - DEBUG - AST completed:
2012-11-24 13:38:59,885 - dexy - DEBUG - tree:
  pattern:*.md|jinja|pandoc
  pattern:*.md|jinja|pandoc|calibre
  pattern:*.md|jinja|pandoc|-odt
  pattern:*.md|jinja|pandoc|-epub
  pattern:*.md|jinja|pandoc|-pdf
  pattern:*.md|jinja|pandoc|-docx
lookup table:
    pattern:*.md|jinja|pandoc|-docx: {'children': ['bundle:code'], 'pandoc': {'ext': '.docx'}}
    bundle:code: {'children': ['pattern:*.R|rout']}
    pattern:*.md|jinja|pandoc|-epub: {'children': ['bundle:code'], 'pandoc': {'ext': '.epub'}}
    pattern:*.md|jinja|pandoc|calibre: {'children': ['bundle:code']}
    pattern:*.md|jinja|pandoc|-odt: {'children': ['bundle:code'], 'pandoc': {'ext': '.odt'}}
    pattern:*.md|jinja|pandoc|-pdf: {'children': ['bundle:code'], 'pandoc': {'ext': '.pdf'}}
    pattern:*.md|jinja|pandoc: {'children': ['bundle:code']}
    pattern:*.R|rout: {'children': []}
2012-11-24 13:38:59,885 - dexy - DEBUG - walking AST:
2012-11-24 13:38:59,885 - dexy - DEBUG - Creating task 'pattern:*.R|rout' with children '()' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x47f6210>}'
2012-11-24 13:38:59,885 - dexy - DEBUG - Creating task 'bundle:code' with children '(PatternDoc:*.R|rout,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x47f6210>}'
2012-11-24 13:38:59,885 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x47f6210>}'
2012-11-24 13:38:59,885 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc|calibre' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x47f6210>}'
2012-11-24 13:38:59,885 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc|-odt' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x47f6210>, 'pandoc': {'ext': '.odt'}}'
2012-11-24 13:38:59,886 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc|-epub' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x47f6210>, 'pandoc': {'ext': '.epub'}}'
2012-11-24 13:38:59,886 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc|-pdf' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x47f6210>, 'pandoc': {'ext': '.pdf'}}'
2012-11-24 13:38:59,886 - dexy - DEBUG - Creating task 'pattern:*.md|jinja|pandoc|-docx' with children '(BundleDoc:code,)' with args '{'wrapper': <dexy.wrapper.Wrapper object at 0x47f6210>, 'pandoc': {'ext': '.docx'}}'
2012-11-24 13:38:59,887 - dexy - DEBUG - batch id is 1005
2012-11-24 13:38:59,887 - dexy - DEBUG - running dexy with config:
2012-11-24 13:38:59,887 - dexy - DEBUG -   artifacts_dir: artifacts
2012-11-24 13:38:59,887 - dexy - DEBUG -   batch_id: 1005
2012-11-24 13:38:59,887 - dexy - DEBUG -   batch_info: {'start_time': 1353793139.886491}
2012-11-24 13:38:59,887 - dexy - DEBUG -   config_file: dexy.conf
2012-11-24 13:38:59,887 - dexy - DEBUG -   danger: False
2012-11-24 13:38:59,887 - dexy - DEBUG -   db_alias: sqlite3
2012-11-24 13:38:59,887 - dexy - DEBUG -   db_file: dexy.sqlite3
2012-11-24 13:38:59,888 - dexy - DEBUG -   disable_tests: False
2012-11-24 13:38:59,888 - dexy - DEBUG -   doc_config: OrderedDict([('.', 'code:\n    - .R|rout\n\n.md|jinja|pandoc:\n    - code\n\n.md|jinja|pandoc|-odt:\n    - pandoc: { ext : .odt }\n    - code\n\n.md|jinja|pandoc|-pdf:\n    - pandoc: { ext : .pdf }\n    - code\n\n.md|jinja|pandoc|-docx:\n    - pandoc: { ext : .docx }\n    - code\n\n.md|jinja|pandoc|-epub:\n    - pandoc: { ext : .epub }\n    - code\n\n.md|jinja|pandoc|calibre:\n    - code\n')])
2012-11-24 13:38:59,888 - dexy - DEBUG -   dont_use_cache: False
2012-11-24 13:38:59,888 - dexy - DEBUG -   dry_run: False
2012-11-24 13:38:59,888 - dexy - DEBUG -   exclude: .git, .svn, tmp, cache
2012-11-24 13:38:59,888 - dexy - DEBUG -   exclude_also: 
2012-11-24 13:38:59,888 - dexy - DEBUG -   globals: 
2012-11-24 13:38:59,888 - dexy - DEBUG -   hashfunction: md5
2012-11-24 13:38:59,888 - dexy - DEBUG -   ignore_nonzero_exit: False
2012-11-24 13:38:59,888 - dexy - DEBUG -   log_dir: logs
2012-11-24 13:38:59,888 - dexy - DEBUG -   log_file: dexy.log
2012-11-24 13:38:59,888 - dexy - DEBUG -   log_format: %(asctime)s - %(name)s - %(levelname)s - %(message)s
2012-11-24 13:38:59,888 - dexy - DEBUG -   log_level: DEBUG
2012-11-24 13:38:59,888 - dexy - DEBUG -   platform_system: Linux
2012-11-24 13:38:59,889 - dexy - DEBUG -   profile: False
2012-11-24 13:38:59,889 - dexy - DEBUG -   recurse: True
2012-11-24 13:38:59,889 - dexy - DEBUG -   reports: 
2012-11-24 13:38:59,889 - dexy - DEBUG -   siblings: False
2012-11-24 13:38:59,889 - dexy - DEBUG -   silent: False
2012-11-24 13:38:59,889 - dexy - DEBUG -   state: None
2012-11-24 13:38:59,889 - dexy - DEBUG -   target: False
2012-11-24 13:38:59,889 - dexy - DEBUG -   uselocals: False
2012-11-24 13:38:59,889 - *.R|rout - DEBUG - creating child of patterndoc *.R|rout: example.R|rout
2012-11-24 13:38:59,890 - *.md|jinja|pandoc - DEBUG - creating child of patterndoc *.md|jinja|pandoc: report.md|jinja|pandoc
2012-11-24 13:38:59,891 - example.R - DEBUG - Setting up InitialArtifact:example.R::Doc:example.R|rout
2012-11-24 13:38:59,891 - example.R - DEBUG - Setting hashstring for example.R to 37efdae66ef5056d41883121456b3c86
2012-11-24 13:38:59,891 - example.R - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:59,891 - dexy - DEBUG - Creating new notification channel 'newchild'
2012-11-24 13:38:59,891 - example.R|rout - DEBUG - Setting up FilterArtifact:example.R|rout::Doc:example.R|rout
2012-11-24 13:38:59,907 - example.R|rout - DEBUG - Setting hashstring for example.R|rout to db00c9d7c68b1858edb98ddfff3140fb
2012-11-24 13:38:59,908 - example.R|rout - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:59,909 - *.md|jinja|pandoc|calibre - DEBUG - creating child of patterndoc *.md|jinja|pandoc|calibre: report.md|jinja|pandoc|calibre
2012-11-24 13:38:59,912 - *.md|jinja|pandoc|-odt - DEBUG - creating child of patterndoc *.md|jinja|pandoc|-odt: report.md|jinja|pandoc|-odt
2012-11-24 13:38:59,913 - *.md|jinja|pandoc|-epub - DEBUG - creating child of patterndoc *.md|jinja|pandoc|-epub: report.md|jinja|pandoc|-epub
2012-11-24 13:38:59,913 - *.md|jinja|pandoc|-pdf - DEBUG - creating child of patterndoc *.md|jinja|pandoc|-pdf: report.md|jinja|pandoc|-pdf
2012-11-24 13:38:59,914 - *.md|jinja|pandoc|-docx - DEBUG - creating child of patterndoc *.md|jinja|pandoc|-docx: report.md|jinja|pandoc|-docx
2012-11-24 13:38:59,915 - report.md - DEBUG - Setting up InitialArtifact:report.md::Doc:report.md|jinja|pandoc
2012-11-24 13:38:59,915 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-24 13:38:59,915 - report.md - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:59,915 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc
2012-11-24 13:38:59,916 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to 3b51ad54d83e46c731e15d04028b1298
2012-11-24 13:38:59,916 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:59,916 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc
2012-11-24 13:38:59,928 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to 56ee4f9438b2be075327e5126137ce95
2012-11-24 13:38:59,928 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:59,929 - report.md - DEBUG - Setting up InitialArtifact:report.md::Doc:report.md|jinja|pandoc|calibre
2012-11-24 13:38:59,929 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-24 13:38:59,929 - report.md - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:59,930 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|calibre
2012-11-24 13:38:59,931 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to bd583aed7fddb0942175f09553c8d9da
2012-11-24 13:38:59,931 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:59,932 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|calibre
2012-11-24 13:38:59,946 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to aa79acb1dcf9be1344c44222c137cea5
2012-11-24 13:38:59,947 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-24 13:38:59,948 - report.md|jinja|pandoc|calibre - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc|calibre::Doc:report.md|jinja|pandoc|calibre
2012-11-24 13:39:00,121 - report.md|jinja|pandoc|calibre - DEBUG - Setting hashstring for report.md|jinja|pandoc|calibre to 60279e1593519c764c2d650aa0f3e5f0
2012-11-24 13:39:00,122 - report.md|jinja|pandoc|calibre - DEBUG - setting up output data of class GenericData
2012-11-24 13:39:00,123 - report.md - DEBUG - Setting up InitialArtifact:report.md::Doc:report.md|jinja|pandoc|-odt
2012-11-24 13:39:00,124 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-24 13:39:00,125 - report.md - DEBUG - setting up output data of class GenericData
2012-11-24 13:39:00,125 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-odt
2012-11-24 13:39:00,128 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to d781adeca229bf3c204d4559e7142f82
2012-11-24 13:39:00,128 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-24 13:39:00,129 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-odt
2012-11-24 13:39:00,142 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to 5e3fd51d5ca109fcd8ea025ec8812a58
2012-11-24 13:39:00,143 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-24 13:39:00,144 - report.md|jinja|pandoc|-odt - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc|-odt::Doc:report.md|jinja|pandoc|-odt
2012-11-24 13:39:00,146 - report.md|jinja|pandoc|-odt - DEBUG - Setting hashstring for report.md|jinja|pandoc|-odt to abc9513aa869aba5c54d4f7bd5fb212a
2012-11-24 13:39:00,146 - report.md|jinja|pandoc|-odt - DEBUG - setting up output data of class GenericData
2012-11-24 13:39:00,147 - report.md - DEBUG - Setting up InitialArtifact:report.md::Doc:report.md|jinja|pandoc|-epub
2012-11-24 13:39:00,148 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-24 13:39:00,148 - report.md - DEBUG - setting up output data of class GenericData
2012-11-24 13:39:00,149 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-epub
2012-11-24 13:39:00,151 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to 268ddcdbbb07b992279bfee51f3fc10a
2012-11-24 13:39:00,152 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-24 13:39:00,152 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-epub
2012-11-24 13:39:00,166 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to b27f64993498e575dfb34cb451b98a60
2012-11-24 13:39:00,168 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-24 13:39:00,170 - report.md|jinja|pandoc|-epub - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc|-epub::Doc:report.md|jinja|pandoc|-epub
2012-11-24 13:39:00,172 - report.md|jinja|pandoc|-epub - DEBUG - Setting hashstring for report.md|jinja|pandoc|-epub to 9f6b0ac9c642cc52dcb00a5996eec4ba
2012-11-24 13:39:00,172 - report.md|jinja|pandoc|-epub - DEBUG - setting up output data of class GenericData
2012-11-24 13:39:00,174 - report.md - DEBUG - Setting up InitialArtifact:report.md::Doc:report.md|jinja|pandoc|-pdf
2012-11-24 13:39:00,175 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-24 13:39:00,176 - report.md - DEBUG - setting up output data of class GenericData
2012-11-24 13:39:00,177 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-pdf
2012-11-24 13:39:00,180 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to b93ce2270e0bca12beabeb94273e155c
2012-11-24 13:39:00,181 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-24 13:39:00,183 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-pdf
2012-11-24 13:39:00,201 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to 9a2ebc0b68c10b24f3373072e135983a
2012-11-24 13:39:00,203 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-24 13:39:00,204 - report.md|jinja|pandoc|-pdf - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc|-pdf::Doc:report.md|jinja|pandoc|-pdf
2012-11-24 13:39:00,206 - report.md|jinja|pandoc|-pdf - DEBUG - Setting hashstring for report.md|jinja|pandoc|-pdf to dd20b3681eff2a48ec03888ef2adfc12
2012-11-24 13:39:00,207 - report.md|jinja|pandoc|-pdf - DEBUG - setting up output data of class GenericData
2012-11-24 13:39:00,208 - report.md - DEBUG - Setting up InitialArtifact:report.md::Doc:report.md|jinja|pandoc|-docx
2012-11-24 13:39:00,209 - report.md - DEBUG - Setting hashstring for report.md to ba4b4eac4cc67bdfe501b9d6c91c4948
2012-11-24 13:39:00,210 - report.md - DEBUG - setting up output data of class GenericData
2012-11-24 13:39:00,211 - report.md|jinja - DEBUG - Setting up FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-docx
2012-11-24 13:39:00,213 - report.md|jinja - DEBUG - Setting hashstring for report.md|jinja to f143a1cc23ee4ca0350b69101644bfe2
2012-11-24 13:39:00,213 - report.md|jinja - DEBUG - setting up output data of class GenericData
2012-11-24 13:39:00,213 - report.md|jinja|pandoc - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-docx
2012-11-24 13:39:00,226 - report.md|jinja|pandoc - DEBUG - Setting hashstring for report.md|jinja|pandoc to 5a19c3f5c58a1f5da222674b87c237ed
2012-11-24 13:39:00,227 - report.md|jinja|pandoc - DEBUG - setting up output data of class GenericData
2012-11-24 13:39:00,227 - report.md|jinja|pandoc|-docx - DEBUG - Setting up FilterArtifact:report.md|jinja|pandoc|-docx::Doc:report.md|jinja|pandoc|-docx
2012-11-24 13:39:00,228 - report.md|jinja|pandoc|-docx - DEBUG - Setting hashstring for report.md|jinja|pandoc|-docx to de75484514388939aa97dd3f00993cb4
2012-11-24 13:39:00,228 - report.md|jinja|pandoc|-docx - DEBUG - setting up output data of class GenericData
2012-11-24 13:39:00,230 - example.R|rout - DEBUG - Running FilterArtifact:example.R|rout::Doc:example.R|rout
2012-11-24 13:39:00,230 - example.R|rout - DEBUG - Output is cached under db00c9d7c68b1858edb98ddfff3140fb, reconstituting...
2012-11-24 13:39:00,231 - example.R|rout - DEBUG - Reconstituting example.txt from database and cache
2012-11-24 13:39:00,232 - example.R|rout - DEBUG - adding additional doc example.txt (created by example.R|rout)
2012-11-24 13:39:00,233 - example.txt - DEBUG - Setting up InitialVirtualArtifact:example.txt::Doc:example.txt
2012-11-24 13:39:00,233 - example.txt - DEBUG - Setting hashstring for example.txt to 67ca147287010eee7af5529b040a79ab
2012-11-24 13:39:00,234 - example.txt - DEBUG - setting up output data of class GenericData
2012-11-24 13:39:00,235 - example.R|rout - DEBUG - Reconstituting example.txt from database and cache
2012-11-24 13:39:00,236 - example.R|rout - DEBUG - Reconstituting plot.png from database and cache
2012-11-24 13:39:00,236 - example.R|rout - DEBUG - adding additional doc plot.png (created by example.R|rout)
2012-11-24 13:39:00,236 - plot.png - DEBUG - Setting up InitialVirtualArtifact:plot.png::Doc:plot.png
2012-11-24 13:39:00,236 - plot.png - DEBUG - Setting hashstring for plot.png to 2fcd6e22786b435da431867dbef1647e
2012-11-24 13:39:00,237 - plot.png - DEBUG - setting up output data of class GenericData
2012-11-24 13:39:00,237 - example.R|rout - DEBUG - Reconstituting plot.png from database and cache
2012-11-24 13:39:00,237 - example.R|rout - DEBUG - Reconstituting storage.json from database and cache
2012-11-24 13:39:00,237 - example.R|rout - DEBUG - adding additional doc storage.json (created by example.R|rout)
2012-11-24 13:39:00,238 - storage.json - DEBUG - Setting up InitialVirtualArtifact:storage.json::Doc:storage.json
2012-11-24 13:39:00,238 - storage.json - DEBUG - Setting hashstring for storage.json to dcebc4433e4a66776a1573a5bc232c98
2012-11-24 13:39:00,238 - storage.json - DEBUG - setting up output data of class GenericData
2012-11-24 13:39:00,239 - example.R|rout - DEBUG - Reconstituting storage.json from database and cache
2012-11-24 13:39:00,239 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc
2012-11-24 13:39:00,240 - report.md|jinja - DEBUG - Output is cached under 3b51ad54d83e46c731e15d04028b1298, reconstituting...
2012-11-24 13:39:00,240 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc
2012-11-24 13:39:00,241 - report.md|jinja|pandoc - DEBUG - Output is cached under 56ee4f9438b2be075327e5126137ce95, reconstituting...
2012-11-24 13:39:00,242 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|calibre
2012-11-24 13:39:00,242 - report.md|jinja - DEBUG - Output is cached under bd583aed7fddb0942175f09553c8d9da, reconstituting...
2012-11-24 13:39:00,242 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|calibre
2012-11-24 13:39:00,243 - report.md|jinja|pandoc - DEBUG - Output is cached under aa79acb1dcf9be1344c44222c137cea5, reconstituting...
2012-11-24 13:39:00,243 - report.md|jinja|pandoc|calibre - DEBUG - Running FilterArtifact:report.md|jinja|pandoc|calibre::Doc:report.md|jinja|pandoc|calibre
2012-11-24 13:39:00,243 - report.md|jinja|pandoc|calibre - DEBUG - Output is not cached under 60279e1593519c764c2d650aa0f3e5f0, running...
2012-11-24 13:39:00,244 - report.md|jinja|pandoc|calibre - DEBUG - setting up wd for report.md|jinja|pandoc|calibre. exists already: artifacts/60279e1593519c764c2d650aa0f3e5f0/
2012-11-24 13:39:00,245 - report.md|jinja|pandoc|calibre - DEBUG - about to run 'ebook-convert report.epub report.mobi ' in 'artifacts/60279e1593519c764c2d650aa0f3e5f0/'
2012-11-24 13:39:01,959 - report.md|jinja|pandoc|calibre - DEBUG - stdout is '1% Converting input to HTML...
InputFormatPlugin: EPUB Input running
on /home/ana/dev/dexy-templates/dexy_templates/pander-template/artifacts/60279e1593519c764c2d650aa0f3e5f0/report.epub
Parsing all content...
34% Running transforms on ebook...
Merging user specified metadata...
Detecting structure...
Flattening CSS and remapping font sizes...
Source base font size is 12.00000pt
Removing fake margins...
Cleaning up manifest...
Trimming unused files from manifest...
Creating MOBI Output...
67% Running MOBI Output plugin
Serializing resources...
Creating MOBI 6 output
Generating in-line TOC...
Applying case-transforming CSS...
Rasterizing SVG images...
Converting XHTML to Mobipocket markup...
Serializing markup content...
  Compressing markup content...
Generating MOBI index for a book
MOBI output written to /home/ana/dev/dexy-templates/dexy_templates/pander-template/artifacts/60279e1593519c764c2d650aa0f3e5f0/report.mobi
Output saved to   /home/ana/dev/dexy-templates/dexy_templates/pander-template/artifacts/60279e1593519c764c2d650aa0f3e5f0/report.mobi
'
2012-11-24 13:39:01,960 - report.md|jinja|pandoc|calibre - DEBUG - stderr is ''
2012-11-24 13:39:01,965 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-odt
2012-11-24 13:39:01,966 - report.md|jinja - DEBUG - Output is cached under d781adeca229bf3c204d4559e7142f82, reconstituting...
2012-11-24 13:39:01,968 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-odt
2012-11-24 13:39:01,970 - report.md|jinja|pandoc - DEBUG - Output is cached under 5e3fd51d5ca109fcd8ea025ec8812a58, reconstituting...
2012-11-24 13:39:01,972 - report.md|jinja|pandoc|-odt - DEBUG - Running FilterArtifact:report.md|jinja|pandoc|-odt::Doc:report.md|jinja|pandoc|-odt
2012-11-24 13:39:01,972 - report.md|jinja|pandoc|-odt - DEBUG - Output is cached under abc9513aa869aba5c54d4f7bd5fb212a, reconstituting...
2012-11-24 13:39:01,976 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-epub
2012-11-24 13:39:01,976 - report.md|jinja - DEBUG - Output is cached under 268ddcdbbb07b992279bfee51f3fc10a, reconstituting...
2012-11-24 13:39:01,977 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-epub
2012-11-24 13:39:01,977 - report.md|jinja|pandoc - DEBUG - Output is cached under b27f64993498e575dfb34cb451b98a60, reconstituting...
2012-11-24 13:39:01,978 - report.md|jinja|pandoc|-epub - DEBUG - Running FilterArtifact:report.md|jinja|pandoc|-epub::Doc:report.md|jinja|pandoc|-epub
2012-11-24 13:39:01,978 - report.md|jinja|pandoc|-epub - DEBUG - Output is cached under 9f6b0ac9c642cc52dcb00a5996eec4ba, reconstituting...
2012-11-24 13:39:01,979 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-pdf
2012-11-24 13:39:01,979 - report.md|jinja - DEBUG - Output is cached under b93ce2270e0bca12beabeb94273e155c, reconstituting...
2012-11-24 13:39:01,979 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-pdf
2012-11-24 13:39:01,980 - report.md|jinja|pandoc - DEBUG - Output is cached under 9a2ebc0b68c10b24f3373072e135983a, reconstituting...
2012-11-24 13:39:01,980 - report.md|jinja|pandoc|-pdf - DEBUG - Running FilterArtifact:report.md|jinja|pandoc|-pdf::Doc:report.md|jinja|pandoc|-pdf
2012-11-24 13:39:01,980 - report.md|jinja|pandoc|-pdf - DEBUG - Output is cached under dd20b3681eff2a48ec03888ef2adfc12, reconstituting...
2012-11-24 13:39:01,981 - report.md|jinja - DEBUG - Running FilterArtifact:report.md|jinja::Doc:report.md|jinja|pandoc|-docx
2012-11-24 13:39:01,981 - report.md|jinja - DEBUG - Output is cached under f143a1cc23ee4ca0350b69101644bfe2, reconstituting...
2012-11-24 13:39:01,982 - report.md|jinja|pandoc - DEBUG - Running FilterArtifact:report.md|jinja|pandoc::Doc:report.md|jinja|pandoc|-docx
2012-11-24 13:39:01,982 - report.md|jinja|pandoc - DEBUG - Output is cached under 5a19c3f5c58a1f5da222674b87c237ed, reconstituting...
2012-11-24 13:39:01,983 - report.md|jinja|pandoc|-docx - DEBUG - Running FilterArtifact:report.md|jinja|pandoc|-docx::Doc:report.md|jinja|pandoc|-docx
2012-11-24 13:39:01,983 - report.md|jinja|pandoc|-docx - DEBUG - Output is cached under de75484514388939aa97dd3f00993cb4, reconstituting...
2012-11-24 13:39:02,225 - dexy - DEBUG - initializing all reporters where ALLREPORTS is True
2012-11-24 13:39:02,226 - dexy - DEBUG - running reporter output
2012-11-24 13:39:02,227 - report:output - DEBUG - writing report.md|jinja|pandoc to output/report.html
2012-11-24 13:39:02,228 - report:output - DEBUG - writing report.md|jinja|pandoc|calibre to output/report.mobi
2012-11-24 13:39:02,228 - report:output - DEBUG - writing report.md|jinja|pandoc|-odt to output/report.odt
2012-11-24 13:39:02,229 - report:output - DEBUG - writing report.md|jinja|pandoc|-epub to output/report.epub
2012-11-24 13:39:02,229 - report:output - DEBUG - writing report.md|jinja|pandoc|-pdf to output/report.pdf
2012-11-24 13:39:02,229 - report:output - DEBUG - writing report.md|jinja|pandoc|-docx to output/report.docx
2012-11-24 13:39:02,229 - report:output - DEBUG - writing example.txt to output/example.txt
2012-11-24 13:39:02,230 - report:output - DEBUG - writing plot.png to output/plot.png
2012-11-24 13:39:02,230 - report:output - DEBUG - writing storage.json to output/storage.json
2012-11-24 13:39:02,230 - dexy - DEBUG - running reporter long
2012-11-24 13:39:02,231 - report:long - DEBUG - writing example.R|rout to output-long/example.R-rout.txt
2012-11-24 13:39:02,231 - report:long - DEBUG - writing report.md|jinja|pandoc to output-long/report.md-jinja-pandoc.html
2012-11-24 13:39:02,231 - report:long - DEBUG - writing report.md|jinja|pandoc|calibre to output-long/report.md-jinja-pandoc-calibre.mobi
2012-11-24 13:39:02,231 - report:long - DEBUG - writing report.md|jinja|pandoc|-odt to output-long/report.md-jinja-pandoc--odt.odt
2012-11-24 13:39:02,231 - report:long - DEBUG - writing report.md|jinja|pandoc|-epub to output-long/report.md-jinja-pandoc--epub.epub
2012-11-24 13:39:02,232 - report:long - DEBUG - writing report.md|jinja|pandoc|-pdf to output-long/report.md-jinja-pandoc--pdf.pdf
2012-11-24 13:39:02,232 - report:long - DEBUG - writing report.md|jinja|pandoc|-docx to output-long/report.md-jinja-pandoc--docx.docx
2012-11-24 13:39:02,232 - report:long - DEBUG - writing example.txt to output-long/example.txt
2012-11-24 13:39:02,232 - report:long - DEBUG - writing plot.png to output-long/plot.png
2012-11-24 13:39:02,232 - report:long - DEBUG - writing storage.json to output-long/storage.json
2012-11-24 13:39:02,233 - dexy - DEBUG - running reporter run
