Metadata-Version: 2.1
Name: depp
Version: 0.3.1
Summary: DEPP: Deep Learning Enables Extending Species Trees using Single Genes
Home-page: https://github.com/yueyujiang/DEPP
Author: Yueyu Jiang
Author-email: y5jiang@ucsd.edu
License: UNKNOWN
Platform: UNKNOWN
Description-Content-Type: text/plain
Requires-Dist: numpy (==1.22.3)
Requires-Dist: treeswift (==1.1.19)
Requires-Dist: torch (==1.11.0)
Requires-Dist: pandas (==1.4.2)
Requires-Dist: pytorch-lightning (==1.5.4)
Requires-Dist: biopython (==1.79)
Requires-Dist: omegaconf (==2.1.0)
Requires-Dist: apples
Requires-Dist: scipy (==1.7.3)
Requires-Dist: dendropy (==4.5.2)

DEPP is a deep-learning-based tool for phylogenetic placement.Output of the tool is the distance matrix between the query sequences and the backbone sequences


