LICENSE
README.md
pyproject.toml
setup.cfg
src/depht/__init__.py
src/depht/__main__.py
src/depht.egg-info/PKG-INFO
src/depht.egg-info/SOURCES.txt
src/depht.egg-info/dependency_links.txt
src/depht.egg-info/entry_points.txt
src/depht.egg-info/requires.txt
src/depht.egg-info/top_level.txt
src/depht/classes/__init__.py
src/depht/classes/contig.py
src/depht/classes/file_translator.py
src/depht/classes/hhresult.py
src/depht/classes/progress.py
src/depht/classes/prophage.py
src/depht/classes/prophage_classifier.py
src/depht/functions/__init__.py
src/depht/functions/annotation.py
src/depht/functions/att.py
src/depht/functions/blastn.py
src/depht/functions/fasta.py
src/depht/functions/find_homologs.py
src/depht/functions/mmseqs.py
src/depht/functions/multiprocess.py
src/depht/functions/prophage_prediction.py
src/depht/functions/run_command.py
src/depht/functions/sliding_window.py
src/depht/functions/sniff_format.py
src/depht/functions/statistics.py
src/depht/functions/visualization.py