MANIFEST.in
README.md
setup.py
data/example_de_novos.txt
data/example_gene_ids.txt
denovonear/__init__.py
denovonear/__main__.py
denovonear/cluster_test.py
denovonear/ensembl_cache.py
denovonear/ensembl_requester.py
denovonear/frameshift_rate.py
denovonear/load_de_novos.py
denovonear/load_gene.py
denovonear/load_mutation_rates.py
denovonear/log_transform_rates.py
denovonear/rate_limiter.py
denovonear/rate_limiter_retries.py
denovonear/simulate.py
denovonear/site_specific_rates.cpp
denovonear/site_specific_rates.pyx
denovonear/transcript.cpp
denovonear/transcript.pxd
denovonear/transcript.pyx
denovonear/weights.cpp
denovonear/weights.pxd
denovonear/weights.pyx
denovonear.egg-info/PKG-INFO
denovonear.egg-info/SOURCES.txt
denovonear.egg-info/dependency_links.txt
denovonear.egg-info/entry_points.txt
denovonear.egg-info/requires.txt
denovonear.egg-info/top_level.txt
denovonear/data/rates.txt
scripts/run_batch.py
src/simulate.cpp
src/simulate.h
src/site_rates.cpp
src/site_rates.h
src/tx.cpp
src/tx.h
src/weighted_choice.cpp
src/weighted_choice.h
tests/__init__.py
tests/test_cluster_test.py
tests/test_ensembl_cache.py
tests/test_ensembl_requester.py
tests/test_frameshift_rate.py
tests/test_geometric_mean.py
tests/test_load_gene.py
tests/test_log_transform.py
tests/test_sequence_methods.py
tests/test_simulate_p_value.py
tests/test_simulations.py
tests/test_site_rates.py
tests/test_transcript.py
tests/test_weighted_choice.py