LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
setup.py
/opt/hostedtoolcache/Python/3.10.13/x64/lib/python3.10/site-packages/gencodegenes/tx.cpp
data/example.grch38.dnms.txt
data/example_de_novos.txt
data/example_gene_ids.txt
scripts/run_batch.py
src/simulate.cpp
src/simulate.h
src/site_rates.cpp
src/site_rates.h
src/weighted_choice.cpp
src/weighted_choice.h
src/denovonear/__init__.py
src/denovonear/__main__.py
src/denovonear/cluster_test.py
src/denovonear/ensembl_cache.py
src/denovonear/ensembl_requester.py
src/denovonear/frameshift_rate.py
src/denovonear/load_de_novos.py
src/denovonear/load_gene.py
src/denovonear/load_mutation_rates.py
src/denovonear/log_transform_rates.py
src/denovonear/rate_limiter.py
src/denovonear/rate_limiter_retries.py
src/denovonear/simulate.py
src/denovonear/site_specific_rates.cpp
src/denovonear/site_specific_rates.pyx
src/denovonear/weights.cpp
src/denovonear/weights.pxd
src/denovonear/weights.pyx
src/denovonear.egg-info/PKG-INFO
src/denovonear.egg-info/SOURCES.txt
src/denovonear.egg-info/dependency_links.txt
src/denovonear.egg-info/entry_points.txt
src/denovonear.egg-info/requires.txt
src/denovonear.egg-info/top_level.txt
src/denovonear/data/rates.txt
tests/__init__.py
tests/test_cluster_test.py
tests/test_ensembl_cache.py
tests/test_ensembl_requester.py
tests/test_frameshift_rate.py
tests/test_gencode.py
tests/test_geometric_mean.py
tests/test_load_gene.py
tests/test_log_transform.py
tests/test_simulate_p_value.py
tests/test_simulations.py
tests/test_site_rates.py
tests/test_weighted_choice.py