Metadata-Version: 2.1
Name: degex
Version: 0.0.21
Summary: Detect Gene Expression in Single-CEll data
Home-page: https://github.com/dsm-72/degex
Author: dsm-72
Author-email: sumner.magruder@yale.edu
License: Apache Software License 2.0
Keywords: nbdev jupyter notebook python single cell detect gene expression spot marker genes
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3.10
Classifier: License :: OSI Approved :: Apache Software License
Requires-Python: >=3.10
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: pandas
Requires-Dist: scipy
Requires-Dist: seaborn
Requires-Dist: scikit-learn
Requires-Dist: numpy
Requires-Dist: graphtools
Requires-Dist: matplotlib (==3.7.0)
Requires-Dist: scanpy (==1.9.2)
Requires-Dist: anndata (==0.8.0)
Requires-Dist: phate
Requires-Dist: scprep
Requires-Dist: magic-impute
Requires-Dist: meld
Requires-Dist: scrublet
Requires-Dist: gseapy
Requires-Dist: DiffusionEMD
Provides-Extra: dev

DEtect Gene EXpression (degex)
================

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## Install

``` sh
# create conda environment
$ conda env create -f env.yml

# update conda environment
$ conda env update -n degex --file env.yml
```

``` sh
pip install degex
```
