.gitignore
CONTRIBUTING.md
LICENSE
MANIFEST.in
README.md
environment.yml
pyproject.toml
setup.py
docs/README.md
docs/examples/README.md
src/__init__.py
src/debase/PIPELINE_FLOW.md
src/debase/__init__.py
src/debase/__main__.py
src/debase/_version.py
src/debase/build_db.py
src/debase/cleanup_sequence.py
src/debase/enzyme_lineage_extractor.py
src/debase/lineage_format.py
src/debase/reaction_info_extractor.py
src/debase/substrate_scope_extractor.py
src/debase/wrapper.py
src/debase.egg-info/PKG-INFO
src/debase.egg-info/SOURCES.txt
src/debase.egg-info/dependency_links.txt
src/debase.egg-info/entry_points.txt
src/debase.egg-info/requires.txt
src/debase.egg-info/top_level.txt