Metadata-Version: 2.1
Name: ddipy
Version: 0.0.4
Summary: Python client for OmicsDI Restful API
Home-page: https://github.com/OmicsDI/ddipy
Author: OmicsDI Team
Author-email: ypriverol@gmail.com
License: LICENSE
Description: [ddipy](https://github.com/OmicsDI/ddipy)
        ======
        
        An [Python package](https://github.com/OmicsDI/ddipy) to obtain data from the Omics Discovery Index ([OmicsDI](http://www.omicsdi.org). It uses the RESTful Web Services at [OmicsDI WS](http://www.omicsdi.org/ws/) for that purpose.
        
        ### Installation
        
        we need to install `ddipy`:  
        
        ```
        pip install ddipy
        ```
        
        ### Examples  
        
        This example shows how retrieve details of one dataset by using the Python package ddipy.
        
        ```python
        from ddipy.dataset_client import DatasetClient
            
        if __name__ == '__main__':
           client = DatasetClient()
           res = client.get_dataset_details("pride", "PXD000210", False)
           
        ```
                
        This example shows a search for all the datasets for human.
        
        ```python
        from ddipy.dataset_client import DatasetClient
            
        if __name__ == '__main__':
           client = DatasetClient()
           res = client.search("cancer human", "publication_date", "ascending")
           
        ```
        
        This example shows a search for all the datasets for cancer human and loop over the pagination
        
        ```python
        from ddipy.dataset_client import DatasetClient
            
        if __name__ == '__main__':
           client = DatasetClient()
           res = client.search("cancer human", "publication_date", "ascending", 1200, 30, 20)
           
        ```
        
        This example is a query to retrieve all the datasets that reported the UniProt protein P21399 as identified.
        
        ```python
        from ddipy.dataset_client import DatasetClient
        
        if __name__ == '__main__':
            client = DatasetClient()
            res = client.search("UNIPROT:P21399")
            
        ```
        
        This example is a query to find all the datasets where the gene ENSG00000147251 is reported as differentially expressed.
        
        ```python
        from ddipy.dataset_client import DatasetClient
        
        if __name__ == '__main__':
            client = DatasetClient()
            res = client.search("ENSEMBL:ENSG00000147251")
            
        ```
        
        This example is a query to retrieve all databases recorded in OmicsDI
        
        ```python
        from ddipy.dataset_client import DatabaseClient
        
        if __name__ == '__main__':
           client = DatabaseClient()
           res = client.get_database_all()
        ```
        
        
        This example is retriveing JSON+LD for dataset page
        
        ```python
        from ddipy.dataset_client import SeoClient
        
        if __name__ == '__main__':
            client = SeoClient()
            res = client.get_seo_dataset("pride", "PXD000210")
        ```
        
        This example is  retriveing JSON+LD for home page
        
        ```python
        from ddipy.dataset_client import SeoClient
        
        if __name__ == '__main__':
            client = SeoClient()
            res = client.get_seo_home()
        ```
        
        This example is a query for statistics about the number of datasets per Tissue
        
        ```python
        from ddipy.dataset_client import StatisticsClient
        
        if __name__ == '__main__':
            client = StatisticsClient()
            res = client.get_statistics_tissues(20)
        ```
        
        This example is a query for statistics about the number of datasets per dieases
        
        ```python
        from ddipy.dataset_client import StatisticsClient
        
        if __name__ == '__main__':
            client = StatisticsClient()
            res = client.get_statistics_diseases(20)
        ```
        
        This example for searching dictionary terms
        
        ```python
        from ddipy.dataset_client import TermClient
        
        if __name__ == '__main__':
            client = TermClient()
            res = client.get_term_by_pattern("hom", 10)
        ```
        
        This example for retrieving frequently terms from the repo
        
        ```python
        from ddipy.dataset_client import TermClient
        
        if __name__ == '__main__':
            client = TermClient()
            res = client.get_term_by_pattern("pride", "description", 20)
        ```
        
        
        Find out about us in our GitHub profiles:
        
        [Yasset Perez-Riverol](https://github.com/ypriverol)  
        [Pan Xu](https://github.com/hll3939092)
        
        
Keywords: pip,omicsDI,WS-client
Platform: any
Requires-Python: >=3.4
Description-Content-Type: text/markdown
