Metadata-Version: 1.0
Name: dbotu
Version: 1.0
Summary: Distribution-based OTU calling
Home-page: http://github.com/swo/dbotu3
Author: Scott Olesen
Author-email: swo@alum.mit.edu
License: MIT License

Copyright (c) 2016 Scott W. Olesen

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Description: Distribution-based OTU calling
        ==============================
        
        -  `source <https://github.com/swo/dbotu3>`__
        -  `academic <http://almlab.mit.edu/dbotu3.html>`__
        -  `PyPi <https://pypi.python.org/pypi/dbotu>`__
        
        *dbotu3* is a new implementation of Sarah Preheim's
        `dbOTU <http://aem.asm.org/content/79/21/6593.long>`__ algorithm. The
        scope is narrower, the numerical comparisons are faster, and the
        interface is more user-friendly.
        
        Read the `documentation <http://dbotu3.readthedocs.io/en/latest/>`__
        for:
        
        -  a guide to getting started,
        -  an explanation of the algorithm, and
        -  the API reference.
        
        You can also read our new
        `manuscript <http://dx.doi.org/10.1101/076927>`__ for more technical
        details about the algorithm.
        
        Requirements
        ------------
        
        -  **Python 3**
        -  Numpy, SciPy, `BioPython <http://biopython.org>`__,
           `Pandas <http://pandas.pydata.org>`__
        -  `Levenshtein <https://pypi.python.org/pypi/python-Levenshtein>`__
        
        To-do
        -----
        
        -  Better coverage for unit tests
        -  Expose key functionality so that the package can be imported and used
           in an existing python pipeline
        
        Authors
        -------
        
        -  **Scott Olesen** - *swo at alum.mit.edu*
        
Platform: any
