LICENSE
MANIFEST.in
README.md
pyproject.toml
src/data_to_paper/__init__.py
src/data_to_paper/env.py
src/data_to_paper/exceptions.py
src/data_to_paper/types.py
src/data_to_paper.egg-info/PKG-INFO
src/data_to_paper.egg-info/SOURCES.txt
src/data_to_paper.egg-info/dependency_links.txt
src/data_to_paper.egg-info/entry_points.txt
src/data_to_paper.egg-info/requires.txt
src/data_to_paper.egg-info/top_level.txt
src/data_to_paper/base_cast/__init__.py
src/data_to_paper/base_cast/cast.py
src/data_to_paper/base_cast/types.py
src/data_to_paper/base_products/__init__.py
src/data_to_paper/base_products/file_descriptions.py
src/data_to_paper/base_products/product.py
src/data_to_paper/base_products/products.py
src/data_to_paper/base_steps/__init__.py
src/data_to_paper/base_steps/base_products_conversers.py
src/data_to_paper/base_steps/base_products_to_file.py
src/data_to_paper/base_steps/base_steps_runner.py
src/data_to_paper/base_steps/converser.py
src/data_to_paper/base_steps/copier.py
src/data_to_paper/base_steps/debugger.py
src/data_to_paper/base_steps/dual_converser.py
src/data_to_paper/base_steps/exceptions.py
src/data_to_paper/base_steps/latex_products_to_pdf.py
src/data_to_paper/base_steps/literature_search.py
src/data_to_paper/base_steps/request_code.py
src/data_to_paper/base_steps/request_latex.py
src/data_to_paper/base_steps/request_literature_search.py
src/data_to_paper/base_steps/request_multi_choice.py
src/data_to_paper/base_steps/request_products_from_user.py
src/data_to_paper/base_steps/request_python_value.py
src/data_to_paper/base_steps/request_quoted_text.py
src/data_to_paper/base_steps/result_converser.py
src/data_to_paper/base_steps/run_all_steps.py
src/data_to_paper/code_and_output_files/__init__.py
src/data_to_paper/code_and_output_files/code_and_output.py
src/data_to_paper/code_and_output_files/file_view_params.py
src/data_to_paper/code_and_output_files/output_file_requirements.py
src/data_to_paper/code_and_output_files/ref_numeric_values.py
src/data_to_paper/code_and_output_files/referencable_text.py
src/data_to_paper/conversation/__init__.py
src/data_to_paper/conversation/actions_and_conversations.py
src/data_to_paper/conversation/conversation.py
src/data_to_paper/conversation/conversation_actions.py
src/data_to_paper/conversation/conversation_manager.py
src/data_to_paper/conversation/message.py
src/data_to_paper/conversation/message_designation.py
src/data_to_paper/conversation/replay.py
src/data_to_paper/conversation/stage.py
src/data_to_paper/interactive/__init__.py
src/data_to_paper/interactive/app_interactor.py
src/data_to_paper/interactive/base_app.py
src/data_to_paper/interactive/base_app_startup.py
src/data_to_paper/interactive/base_widgets.py
src/data_to_paper/interactive/enum_types.py
src/data_to_paper/interactive/get_app.py
src/data_to_paper/interactive/human_actions.py
src/data_to_paper/interactive/human_review.py
src/data_to_paper/interactive/pyside_app.py
src/data_to_paper/interactive/styles.py
src/data_to_paper/interactive/symbols.py
src/data_to_paper/interactive/utils.py
src/data_to_paper/latex/__init__.py
src/data_to_paper/latex/check_dependencies.py
src/data_to_paper/latex/citataion_utils.py
src/data_to_paper/latex/clean_latex.py
src/data_to_paper/latex/exceptions.py
src/data_to_paper/latex/latex_doc.py
src/data_to_paper/latex/latex_extractor.py
src/data_to_paper/latex/latex_section_tags.py
src/data_to_paper/latex/latex_to_html.py
src/data_to_paper/latex/latex_to_pdf.py
src/data_to_paper/latex/tables.py
src/data_to_paper/latex/resources/adjust_section.lua
src/data_to_paper/latex/resources/html_template_for_title_latex.html
src/data_to_paper/latex/resources/html_template_for_titleless_latex.html
src/data_to_paper/latex/resources/watermark.pdf
src/data_to_paper/llm_coding_utils/__init__.py
src/data_to_paper/llm_coding_utils/consts.py
src/data_to_paper/llm_coding_utils/describe.py
src/data_to_paper/llm_coding_utils/df_plot_with_pvalue.py
src/data_to_paper/llm_coding_utils/df_to_figure.py
src/data_to_paper/llm_coding_utils/df_to_latex.py
src/data_to_paper/llm_coding_utils/label_latex_source.py
src/data_to_paper/llm_coding_utils/matplotlib_utils.py
src/data_to_paper/llm_coding_utils/note_and_legend.py
src/data_to_paper/llm_coding_utils/utils.py
src/data_to_paper/llm_created_scripts/__init__.py
src/data_to_paper/llm_created_scripts/script_to_run.py
src/data_to_paper/projects/ML/README.md
src/data_to_paper/projects/ML/data/tracheal_tube_insertion.csv.zip
src/data_to_paper/projects/ML/fixed_goal_easy/data-to-paper-hypothesis-testing.json
src/data_to_paper/projects/ML/fixed_goal_easy/general_description.txt
src/data_to_paper/projects/ML/fixed_goal_easy/tracheal_tube_insertion.csv.description.txt
src/data_to_paper/projects/ML/fixed_goal_hard/data-to-paper-hypothesis-testing.json
src/data_to_paper/projects/ML/fixed_goal_hard/general_description.txt
src/data_to_paper/projects/ML/fixed_goal_hard/tracheal_tube_insertion.csv.description.txt
src/data_to_paper/projects/ML/fixed_goal_medium/data-to-paper-hypothesis-testing.json
src/data_to_paper/projects/ML/fixed_goal_medium/general_description.txt
src/data_to_paper/projects/ML/fixed_goal_medium/tracheal_tube_insertion.csv.description.txt
src/data_to_paper/projects/diabetes/README.md
src/data_to_paper/projects/diabetes/data/diabetes_binary_health_indicators_BRFSS2015.csv.zip
src/data_to_paper/projects/diabetes/open_goal/data-to-paper-hypothesis-testing.json
src/data_to_paper/projects/diabetes/open_goal/diabetes_binary_health_indicators_BRFSS2015.csv.description.txt
src/data_to_paper/projects/diabetes/open_goal/general_description.txt
src/data_to_paper/projects/nrp_nicu/README.md
src/data_to_paper/projects/nrp_nicu/data/meconium_nicu_dataset_preprocessed_short.csv.zip
src/data_to_paper/projects/nrp_nicu/fixed_goal/data-to-paper-hypothesis-testing.json
src/data_to_paper/projects/nrp_nicu/fixed_goal/general_description.txt
src/data_to_paper/projects/nrp_nicu/fixed_goal/meconium_nicu_dataset_preprocessed_short.csv.description.txt
src/data_to_paper/projects/social_network/README.md
src/data_to_paper/projects/social_network/data/congress.csv.zip
src/data_to_paper/projects/social_network/data/congress.edgelist.zip
src/data_to_paper/projects/social_network/data/congress_edges.dat.zip
src/data_to_paper/projects/social_network/data/congress_edges_weighted.dat.zip
src/data_to_paper/projects/social_network/data/congress_members.csv.zip
src/data_to_paper/projects/social_network/data/congress_network_data.json.zip
src/data_to_paper/projects/social_network/data/reformat_files.py
src/data_to_paper/projects/social_network/open_goal/congress_edges.dat.description.txt
src/data_to_paper/projects/social_network/open_goal/congress_members.csv.description.txt
src/data_to_paper/projects/social_network/open_goal/data-to-paper-hypothesis-testing.json
src/data_to_paper/projects/social_network/open_goal/general_description.txt
src/data_to_paper/projects/toy_example/data/number.txt
src/data_to_paper/projects/toy_example/fibonacci/data_to_paper-toy-example.json
src/data_to_paper/projects/toy_example/fibonacci/general_description.txt
src/data_to_paper/projects/toy_example/fibonacci/number.txt.description.txt
src/data_to_paper/projects/toy_example/prime_numbers/data_to_paper-toy-example.json
src/data_to_paper/projects/toy_example/prime_numbers/general_description.txt
src/data_to_paper/projects/toy_example/prime_numbers/number.txt.description.txt
src/data_to_paper/research_types/__init__.py
src/data_to_paper/research_types/hypothesis_testing/__init__.py
src/data_to_paper/research_types/hypothesis_testing/app_startup.py
src/data_to_paper/research_types/hypothesis_testing/cast.py
src/data_to_paper/research_types/hypothesis_testing/env.py
src/data_to_paper/research_types/hypothesis_testing/literature_search.py
src/data_to_paper/research_types/hypothesis_testing/produce_pdf_step.py
src/data_to_paper/research_types/hypothesis_testing/product_types.py
src/data_to_paper/research_types/hypothesis_testing/reviewing_steps.py
src/data_to_paper/research_types/hypothesis_testing/scientific_products.py
src/data_to_paper/research_types/hypothesis_testing/scientific_stage.py
src/data_to_paper/research_types/hypothesis_testing/steps_runner.py
src/data_to_paper/research_types/hypothesis_testing/writing_steps.py
src/data_to_paper/research_types/hypothesis_testing/check_df_to_funcs/__init__.py
src/data_to_paper/research_types/hypothesis_testing/check_df_to_funcs/abbreviations.py
src/data_to_paper/research_types/hypothesis_testing/check_df_to_funcs/df_checker.py
src/data_to_paper/research_types/hypothesis_testing/check_df_to_funcs/utils.py
src/data_to_paper/research_types/hypothesis_testing/coding/__init__.py
src/data_to_paper/research_types/hypothesis_testing/coding/after_coding.py
src/data_to_paper/research_types/hypothesis_testing/coding/base_code_conversers.py
src/data_to_paper/research_types/hypothesis_testing/coding/utils.py
src/data_to_paper/research_types/hypothesis_testing/coding/analysis/__init__.py
src/data_to_paper/research_types/hypothesis_testing/coding/analysis/coding.py
src/data_to_paper/research_types/hypothesis_testing/coding/analysis/utils.py
src/data_to_paper/research_types/hypothesis_testing/coding/analysis/my_utils/__init__.py
src/data_to_paper/research_types/hypothesis_testing/coding/analysis/my_utils/df_to_figure.py
src/data_to_paper/research_types/hypothesis_testing/coding/analysis/my_utils/df_to_latex.py
src/data_to_paper/research_types/hypothesis_testing/coding/displayitems/__init__.py
src/data_to_paper/research_types/hypothesis_testing/coding/displayitems/coding.py
src/data_to_paper/research_types/hypothesis_testing/coding/displayitems/my_utils/__init__.py
src/data_to_paper/research_types/hypothesis_testing/coding/displayitems/my_utils/df_formatting_utils.py
src/data_to_paper/research_types/hypothesis_testing/coding/displayitems/my_utils/df_to_figure.py
src/data_to_paper/research_types/hypothesis_testing/coding/displayitems/my_utils/df_to_latex.py
src/data_to_paper/research_types/hypothesis_testing/coding/exploration/__init__.py
src/data_to_paper/research_types/hypothesis_testing/coding/exploration/coding.py
src/data_to_paper/research_types/hypothesis_testing/coding/preprocessing/__init__.py
src/data_to_paper/research_types/hypothesis_testing/coding/preprocessing/coding.py
src/data_to_paper/research_types/hypothesis_testing/themes/__init__.py
src/data_to_paper/research_types/hypothesis_testing/themes/big_bang_theory.py
src/data_to_paper/research_types/toy_example/__init__.py
src/data_to_paper/research_types/toy_example/app_startup.py
src/data_to_paper/research_types/toy_example/cast.py
src/data_to_paper/research_types/toy_example/coding_steps.py
src/data_to_paper/research_types/toy_example/env.py
src/data_to_paper/research_types/toy_example/produce_pdf_step.py
src/data_to_paper/research_types/toy_example/products.py
src/data_to_paper/research_types/toy_example/stage.py
src/data_to_paper/research_types/toy_example/steps_runner.py
src/data_to_paper/research_types/toy_example/writing_steps.py
src/data_to_paper/research_types/toy_example/themes/__init__.py
src/data_to_paper/research_types/toy_example/themes/big_bang_theory.py
src/data_to_paper/run_gpt_code/__init__.py
src/data_to_paper/run_gpt_code/attr_replacers.py
src/data_to_paper/run_gpt_code/base_run_contexts.py
src/data_to_paper/run_gpt_code/cache_runs.py
src/data_to_paper/run_gpt_code/code_runner.py
src/data_to_paper/run_gpt_code/code_runner_wrapper.py
src/data_to_paper/run_gpt_code/code_utils.py
src/data_to_paper/run_gpt_code/config.py
src/data_to_paper/run_gpt_code/exceptions.py
src/data_to_paper/run_gpt_code/extract_and_check_code.py
src/data_to_paper/run_gpt_code/known_mis_imports.py
src/data_to_paper/run_gpt_code/my_module.py
src/data_to_paper/run_gpt_code/run_code_in_context.py
src/data_to_paper/run_gpt_code/run_contexts.py
src/data_to_paper/run_gpt_code/run_issues.py
src/data_to_paper/run_gpt_code/timeout_context.py
src/data_to_paper/run_gpt_code/user_script_name.py
src/data_to_paper/run_gpt_code/overrides/__init__.py
src/data_to_paper/run_gpt_code/overrides/contexts.py
src/data_to_paper/run_gpt_code/overrides/pvalue.py
src/data_to_paper/run_gpt_code/overrides/types.py
src/data_to_paper/run_gpt_code/overrides/utils.py
src/data_to_paper/run_gpt_code/overrides/dataframes/__init__.py
src/data_to_paper/run_gpt_code/overrides/dataframes/dataframe_operations.py
src/data_to_paper/run_gpt_code/overrides/dataframes/df_with_attrs.py
src/data_to_paper/run_gpt_code/overrides/dataframes/original_methods.py
src/data_to_paper/run_gpt_code/overrides/dataframes/override_dataframe.py
src/data_to_paper/run_gpt_code/overrides/dataframes/utils.py
src/data_to_paper/run_gpt_code/overrides/dataframes/df_methods/__init__.py
src/data_to_paper/run_gpt_code/overrides/dataframes/df_methods/describe.py
src/data_to_paper/run_gpt_code/overrides/dataframes/df_methods/methods.py
src/data_to_paper/run_gpt_code/overrides/dataframes/df_methods/raise_on_call.py
src/data_to_paper/run_gpt_code/overrides/dataframes/df_methods/to_latex.py
src/data_to_paper/run_gpt_code/overrides/random/__init__.py
src/data_to_paper/run_gpt_code/overrides/random/override_random.py
src/data_to_paper/run_gpt_code/overrides/scipy/__init__.py
src/data_to_paper/run_gpt_code/overrides/scipy/override_scipy.py
src/data_to_paper/run_gpt_code/overrides/sklearn/__init__.py
src/data_to_paper/run_gpt_code/overrides/sklearn/override_sklearn.py
src/data_to_paper/run_gpt_code/overrides/statsmodels/__init__.py
src/data_to_paper/run_gpt_code/overrides/statsmodels/override_statsmodels.py
src/data_to_paper/run_gpt_code/overrides/statsmodels/pvalue_dtype.py
src/data_to_paper/scripts/__init__.py
src/data_to_paper/scripts/check_df_file.py
src/data_to_paper/scripts/check_resources.py
src/data_to_paper/scripts/run.py
src/data_to_paper/scripts/run_code.py
src/data_to_paper/servers/__init__.py
src/data_to_paper/servers/api_cost.py
src/data_to_paper/servers/base_server.py
src/data_to_paper/servers/check_connection.py
src/data_to_paper/servers/crossref.py
src/data_to_paper/servers/custom_types.py
src/data_to_paper/servers/json_dump.py
src/data_to_paper/servers/llm_call.py
src/data_to_paper/servers/model_engine.py
src/data_to_paper/servers/semantic_scholar.py
src/data_to_paper/servers/serialize_exceptions.py
src/data_to_paper/servers/types.py
src/data_to_paper/terminate/__init__.py
src/data_to_paper/terminate/exceptions.py
src/data_to_paper/terminate/resource_checking.py
src/data_to_paper/text/__init__.py
src/data_to_paper/text/formatted_sections.py
src/data_to_paper/text/highlighted_text.py
src/data_to_paper/text/text_counting.py
src/data_to_paper/text/text_extractors.py
src/data_to_paper/text/text_formatting.py
src/data_to_paper/text/text_numeric_formatting.py
src/data_to_paper/utils/check_numeric_values.py
src/data_to_paper/utils/check_type.py
src/data_to_paper/utils/console_log_to_html.py
src/data_to_paper/utils/dataframe.py
src/data_to_paper/utils/file_utils.py
src/data_to_paper/utils/iterators.py
src/data_to_paper/utils/multi_process.py
src/data_to_paper/utils/mutable.py
src/data_to_paper/utils/nice_list.py
src/data_to_paper/utils/numerics.py
src/data_to_paper/utils/operator_value.py
src/data_to_paper/utils/print_to_file.py
src/data_to_paper/utils/replacer.py
src/data_to_paper/utils/scholar_server_caller.py
src/data_to_paper/utils/serialize.py
src/data_to_paper/utils/subprocess_call.py
src/data_to_paper/utils/tag_pairs.py
src/data_to_paper/utils/types.py