.gitignore
README.md
environment.yml
pyproject.toml
.github/workflows/ci.yml
.github/workflows/ci_windows.yml
.github/workflows/deploy.yml
notebook/.keep
notebook/basic_integration_test.py
notebook/ci diag.py
notebook/dartsort_dredge_demo.ipynb
notebook/dartsort_dredge_demo.py
notebook/data test.py
notebook/dead reckoning.py
notebook/denoise np1.py
notebook/denoise np2.py
notebook/exploratory.py
notebook/geom debug.py
notebook/hdbscan_clustering_5min.py
notebook/hybrid 10.py
notebook/hybrid cluster.py
notebook/hybrid_11.py
notebook/initial training.py
notebook/make hybrid.py
notebook/mgh.py
notebook/np1 feats.py
notebook/np2 processing version c.py
notebook/paperfigs.py
notebook/pdists.py
notebook/postcheck.py
notebook/ptp vae.py
notebook/re clust.py
notebook/reg fig loop.py
notebook/reg_sim_exp.py
notebook/relocating.py
notebook/relocating_all.py
notebook/restats
notebook/sortStinger1.py
notebook/sortStinger3.py
notebook/sortStinger4.py
notebook/sortStinger5.py
notebook/sortStinger6.py
notebook/spike farm.py
notebook/ss_ensemble_sim.py
notebook/ss_ensemble_sim_drift.py
notebook/ss_sim.py
notebook/stan diagnostics.py
notebook/storytelling c.py
notebook/storytelling.py
notebook/subtract_with_phaseshift_denoiser.py
notebook/thomas.py
notebook/tests/debug_matching.py
notebook/tests/test_agreement.py
notebook/tests/test_amplitude_scaling.py
notebook/tests/test_batch_optim.py
notebook/tests/test_ibme.py
notebook/tests/test_mm_initialization.py
notebook/tests/test_normxcorr1d.py
notebook/tests/test_reassignment.py
notebook/tests/test_relocation.py
src/DARTsort.egg-info/PKG-INFO
src/DARTsort.egg-info/SOURCES.txt
src/DARTsort.egg-info/dependency_links.txt
src/DARTsort.egg-info/entry_points.txt
src/DARTsort.egg-info/requires.txt
src/DARTsort.egg-info/top_level.txt
src/dartsort/__init__.py
src/dartsort/cli.py
src/dartsort/config.py
src/dartsort/main.py
src/dartsort/clustering/__init__.py
src/dartsort/clustering/cluster_util.py
src/dartsort/clustering/clustering.py
src/dartsort/clustering/clustering_features.py
src/dartsort/clustering/density.py
src/dartsort/clustering/forward_backward.py
src/dartsort/clustering/kmeans.py
src/dartsort/clustering/merge.py
src/dartsort/clustering/modes.py
src/dartsort/clustering/refine_util.py
src/dartsort/clustering/relocate.py
src/dartsort/clustering/split.py
src/dartsort/clustering/gmm/mixture.py
src/dartsort/clustering/gmm/stable_features.py
src/dartsort/detect/__init__.py
src/dartsort/detect/detect.py
src/dartsort/detect/detect_filters.py
src/dartsort/evaluate/__init__.py
src/dartsort/evaluate/analysis.py
src/dartsort/evaluate/comparison.py
src/dartsort/evaluate/hybrid_util.py
src/dartsort/evaluate/noise_recording_tools.py
src/dartsort/evaluate/sim_template_tools.py
src/dartsort/evaluate/simkit.py
src/dartsort/evaluate/simlib.py
src/dartsort/localize/__init__.py
src/dartsort/localize/localize_torch.py
src/dartsort/localize/localize_util.py
src/dartsort/peel/__init__.py
src/dartsort/peel/grab.py
src/dartsort/peel/matching.py
src/dartsort/peel/peel_base.py
src/dartsort/peel/running_template.py
src/dartsort/peel/subtract.py
src/dartsort/peel/threshold.py
src/dartsort/peel/universal.py
src/dartsort/peel/matching_util/__init__.py
src/dartsort/peel/matching_util/compressed_upsampled.py
src/dartsort/peel/matching_util/drifty.py
src/dartsort/peel/matching_util/matching_base.py
src/dartsort/peel/matching_util/pairwise.py
src/dartsort/peel/matching_util/pairwise_util.py
src/dartsort/pretrained/default_temporal_kernel.npy
src/dartsort/pretrained/detect_np1.pt
src/dartsort/pretrained/detect_np2.pt
src/dartsort/pretrained/glasbey1024.npz
src/dartsort/pretrained/offset_trained_denoiser.pt
src/dartsort/pretrained/offset_trained_denoiser_added_temp.pt
src/dartsort/pretrained/offset_trained_denoiser_added_temp_boost.pt
src/dartsort/pretrained/original_single_chan_denoiser.pt
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src/dartsort/templates/__init__.py
src/dartsort/templates/get_templates.py
src/dartsort/templates/postprocess_util.py
src/dartsort/templates/realignment.py
src/dartsort/templates/superres_util.py
src/dartsort/templates/template_util.py
src/dartsort/templates/templates.py
src/dartsort/transform/__init__.py
src/dartsort/transform/_multichan_denoiser_kit.py
src/dartsort/transform/all_transformers.py
src/dartsort/transform/amortized_localization.py
src/dartsort/transform/amplitudes.py
src/dartsort/transform/decollider.py
src/dartsort/transform/enforce_decrease.py
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src/dartsort/transform/single_channel_denoiser.py
src/dartsort/transform/single_channel_templates.py
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src/dartsort/transform/temporal_pca.py
src/dartsort/transform/transform_base.py
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src/dartsort/util/data_util.py
src/dartsort/util/drift_util.py
src/dartsort/util/internal_config.py
src/dartsort/util/interpolation_util.py
src/dartsort/util/job_util.py
src/dartsort/util/logging_util.py
src/dartsort/util/main_util.py
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src/dartsort/util/noise_util.py
src/dartsort/util/peel_util.py
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src/dartsort/util/spikeio.py
src/dartsort/util/spiketorch.py
src/dartsort/util/torch_optimization_util.py
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src/dartsort/util/universal_util.py
src/dartsort/util/waveform_util.py
src/dartsort/util/testing_util/__init__.py
src/dartsort/util/testing_util/matching_debug_util.py
src/dartsort/util/testing_util/mixture_testing_util.py
src/dartsort/vis/__init__.py
src/dartsort/vis/analysis_plots.py
src/dartsort/vis/colors.py
src/dartsort/vis/gt.py
src/dartsort/vis/layout.py
src/dartsort/vis/metrics_util.py
src/dartsort/vis/mixture.py
src/dartsort/vis/over_time.py
src/dartsort/vis/recanim.py
src/dartsort/vis/scatterplots.py
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src/dartsort/vis/unit.py
src/dartsort/vis/unit_comparison.py
src/dartsort/vis/versus.py
src/dartsort/vis/vismain.py
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tests/conftest.py
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tests/test_clustering.py
tests/test_config.py
tests/test_dartsort.py
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tests/test_enforce_decrease.py
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tests/test_kmeans.py
tests/test_linalg.py
tests/test_localize_torch.py
tests/test_matching.py
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tests/test_relocate.py
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tests/test_universal.py
tests/test_util.py
tests/test_waveform_util.py