LICENSE
MANIFEST.in
README.md
requirements.txt
setup.py
src/DAJIN2/__init__.py
src/DAJIN2/gui.py
src/DAJIN2/main.py
src/DAJIN2/template_igvjs.html
src/DAJIN2/view.py
src/DAJIN2.egg-info/PKG-INFO
src/DAJIN2.egg-info/SOURCES.txt
src/DAJIN2.egg-info/dependency_links.txt
src/DAJIN2.egg-info/entry_points.txt
src/DAJIN2.egg-info/requires.txt
src/DAJIN2.egg-info/top_level.txt
src/DAJIN2/core/__init__.py
src/DAJIN2/core/core.py
src/DAJIN2/core/classification/__init__.py
src/DAJIN2/core/classification/classifier.py
src/DAJIN2/core/clustering/__init__.py
src/DAJIN2/core/clustering/clustering.py
src/DAJIN2/core/clustering/make_kmer.py
src/DAJIN2/core/clustering/make_score.py
src/DAJIN2/core/clustering/merge_clusters.py
src/DAJIN2/core/clustering/return_labels.py
src/DAJIN2/core/consensus/__init__.py
src/DAJIN2/core/consensus/clust_subsetter.py
src/DAJIN2/core/consensus/consensus.py
src/DAJIN2/core/consensus/name_handler.py
src/DAJIN2/core/preprocess/__init__.py
src/DAJIN2/core/preprocess/cache_checker.py
src/DAJIN2/core/preprocess/directories.py
src/DAJIN2/core/preprocess/extract_mutation_loci.py
src/DAJIN2/core/preprocess/fastx_parser.py
src/DAJIN2/core/preprocess/generate_insertion_fasta.py
src/DAJIN2/core/preprocess/genome_fetcher.py
src/DAJIN2/core/preprocess/homopolymer_handler.py
src/DAJIN2/core/preprocess/knockin_handler.py
src/DAJIN2/core/preprocess/mapping.py
src/DAJIN2/core/preprocess/midsv_caller.py
src/DAJIN2/core/preprocess/tmp_extract_errors_in_knockin_loci.py.py
src/DAJIN2/core/preprocess/tmp_extract_mutation_loci_with_indexmapping.py
src/DAJIN2/core/preprocess/tmp_generate_truncated_fasta.py
src/DAJIN2/core/preprocess/tmp_get_index_mapping.py
src/DAJIN2/core/preprocess/tmp_replace_NtoD.py
src/DAJIN2/core/report/__init__.py
src/DAJIN2/core/report/report_bam.py
src/DAJIN2/core/report/report_files.py
src/DAJIN2/core/report/report_mutation.py
src/DAJIN2/static/css/style.css
src/DAJIN2/templates/index.html
src/DAJIN2/utils/config.py
src/DAJIN2/utils/cssplits_handler.py
src/DAJIN2/utils/input_validator.py
src/DAJIN2/utils/io.py
src/DAJIN2/utils/report_generator.py
src/DAJIN2/utils/sam_handler.py
src/DAJIN2/utils/tmp_memory_manager.py
src/DAJIN2/utils/__pycache__/config.cpython-310.pyc
src/DAJIN2/utils/__pycache__/cssplits_handler.cpython-310.pyc
src/DAJIN2/utils/__pycache__/input_validator.cpython-310.pyc
src/DAJIN2/utils/__pycache__/io.cpython-310.pyc
src/DAJIN2/utils/__pycache__/report_generator.cpython-310.pyc
src/DAJIN2/utils/__pycache__/sam_handler.cpython-310.pyc