from DAJIN2.core.preprocess import (
    fastx_parser,
    genome_fetcher,
    cache_checker,
    directories,
    mapping,
    midsv_caller,
)


from DAJIN2.core.preprocess.knockin_handler import extract_knockin_loci
from DAJIN2.core.preprocess.extract_mutation_loci import extract_mutation_loci
from DAJIN2.core.preprocess.generate_insertion_fasta import generate_insertion_fasta

# from DAJIN2.core.preprocess.extract_mutation_loci import process_mutation_loci
# from DAJIN2.core.preprocess.tmp_get_index_mapping import save_index_mapping
