.gitignore
LICENSE
MANIFEST.in
README.md
pyproject.toml
.github/workflows/lint-and-test.yml
.github/workflows/python-publish.yml
benchmarks/benchmark_read_csv.py
benchmarks/generate_time_series.py
daisypy/optim/__init__.py
daisypy/optim/_version.py
daisypy/optim/aggregate_fns.py
daisypy/optim/aggregate_objective.py
daisypy/optim/ax.py
daisypy/optim/ax_optimizer.py
daisypy/optim/cma_optimizer.py
daisypy/optim/create.py
daisypy/optim/csv_log.py
daisypy/optim/dai_file_generator.py
daisypy/optim/dlf_data_extraction.py
daisypy/optim/file_generator.py
daisypy/optim/file_generators.py
daisypy/optim/formatters.py
daisypy/optim/log.py
daisypy/optim/logger.py
daisypy/optim/logging.py
daisypy/optim/loss_fns.py
daisypy/optim/loss_wrapper.py
daisypy/optim/multi_file_generator.py
daisypy/optim/multi_objective.py
daisypy/optim/objective.py
daisypy/optim/optimizer.py
daisypy/optim/parameter.py
daisypy/optim/problem.py
daisypy/optim/py_file_generator.py
daisypy/optim/runner.py
daisypy/optim/scalar_objective.py
daisypy/optim/sequential_optimizer.py
daisypy/optim/terminal_log.py
daisypy/optim/util.py
daisypy/optim/visualize.py
daisypy/optim/data/analyze.py
daisypy/optim/data/default-template.dai
daisypy/optim/data/optimize_template.py
daisypy_optim.egg-info/PKG-INFO
daisypy_optim.egg-info/SOURCES.txt
daisypy_optim.egg-info/dependency_links.txt
daisypy_optim.egg-info/entry_points.txt
daisypy_optim.egg-info/requires.txt
daisypy_optim.egg-info/top_level.txt
doc/development.md
doc/getting-started-linux.md
doc/getting-started-win.md
doc/examples/README.md
doc/examples/multi_objective_ax.py
doc/examples/multiple_scenarios.py
doc/examples/multiple_scenarios_with_python.py
doc/examples/single_objective_combined_outputs.py
doc/examples/single_objective_two_parameters_ax.py
doc/examples/single_objective_two_parameters_cma.py
doc/examples/single_objective_two_parameters_sequential.py
doc/examples/single_objective_with_python.py
doc/examples/example-data/field_nitrogen.dlf
doc/examples/example-data/measured-field-nitrogen.csv
doc/examples/example-data/template.dai
doc/examples/example-data/combined-outputs/run.dai
doc/examples/example-data/combined-outputs/target.csv
doc/examples/example-data/combined-outputs/template.dai
doc/examples/example-data/multiple-scenarios/reference.dai
doc/examples/example-data/multiple-scenarios/target-askov.csv
doc/examples/example-data/multiple-scenarios/target-foulum.csv
doc/examples/example-data/multiple-scenarios/target-jyndevad.csv
doc/examples/example-data/multiple-scenarios/template-python-reaction.dai
doc/examples/example-data/multiple-scenarios/template.dai
doc/examples/example-data/python-chemical-reaction/daisy-react.py
doc/examples/example-data/python-chemical-reaction/target.csv
doc/examples/example-data/python-chemical-reaction/test-pyreact.dai
tests/hello.dai
tests/markers.py
tests/mockup.py
tests/test_cma_optimizer.py
tests/test_csv_log.py
tests/test_dai_file_generator.py
tests/test_default_logger.py
tests/test_dlf_data_extraction.py
tests/test_multi_file_generator.py
tests/test_objectives.py
tests/test_problem.py
tests/test_py_file_generator.py
tests/test_python_chemical_reaction.py
tests/test_run_with_python.py
tests/test_runner.py
tests/test_scalar_objective.py
tests/test_sequential_optimizer.py
tests/test_terminal_log.py
tests/py-files/util.py
tests/templates/template.dai
tests/templates/template.py
tests/templates/template2.py
tests/test-data/dlfs/soil_NO3_profile.dlf
tests/test-data/python-chemical-reaction/daisy-react.py
tests/test-data/python-chemical-reaction/target.csv
tests/test-data/python-chemical-reaction/test-pyreact.dai
tests/test-data/targets/comma-separated.csv
tests/test-data/targets/semi-colon-separated.csv
tests/test-data/targets/tab-seperated.csv