AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE.txt
MANIFEST.in
README.rst
setup.cfg
setup.py
d3r/__init__.py
d3r/blastnfilter.py
d3r/celppreports.py
d3r/celpprunner.py
d3r/chimera_proteinligprep.py
d3r/evaluate.py
d3r/genchallengedata.py
d3r/getchallengedata.py
d3r/glidedocking.py
d3r/no_prot_omega_lig_prep.py
d3r/oefreddocking.py
d3r/packdockingresults.py
d3r/post_evaluation.py
d3r/postanalysis.py
d3r/proteinligprep.py
d3r/vinadocking.py
d3r.egg-info/PKG-INFO
d3r.egg-info/SOURCES.txt
d3r.egg-info/dependency_links.txt
d3r.egg-info/not-zip-safe
d3r.egg-info/requires.txt
d3r.egg-info/top_level.txt
d3r/blast/__init__.py
d3r/blast/base.py
d3r/blast/hit.py
d3r/blast/hit_sequence.py
d3r/blast/ligand.py
d3r/blast/mcss.py
d3r/blast/parse_alignment.py
d3r/blast/query.py
d3r/celpp/__init__.py
d3r/celpp/blastnfilter.py
d3r/celpp/challengedata.py
d3r/celpp/chimeraprep.py
d3r/celpp/dataimport.py
d3r/celpp/evaluation.py
d3r/celpp/extsubmission.py
d3r/celpp/filetransfer.py
d3r/celpp/glide.py
d3r/celpp/makeblastdb.py
d3r/celpp/participant.py
d3r/celpp/postevaluation.py
d3r/celpp/proteinligprep.py
d3r/celpp/task.py
d3r/celpp/util.py
d3r/celpp/vina.py
d3r/celppade/__init__.py
d3r/celppade/custom_dock.py
d3r/celppade/custom_ligand_prep.py
d3r/celppade/custom_protein_prep.py
d3r/filter/__init__.py
d3r/filter/filter.py
d3r/filter/filtering_sets.py
d3r/utilities/__init__.py
d3r/utilities/align.py
d3r/utilities/analysis.py
d3r/utilities/challenge_data.py
d3r/utilities/in_put.py
d3r/utilities/io_parser.py
d3r/utilities/out_put.py
d3r/utilities/readers.py
d3r/utilities/run.py
d3r/utilities/writers.py
docs/Makefile
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/d3r.blast.rst
docs/d3r.celpp.rst
docs/d3r.celppade.rst
docs/d3r.filter.rst
docs/d3r.rst
docs/d3r.utilities.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/modules.rst
docs/readme.rst
docs/usage.rst
tests/__init__.py
tests/test_blastnfilter.py
tests/test_celppcommandlinescripts.py
tests/test_celppreports.py
tests/test_celpprunner.py
tests/test_chimera_proteinligprep.py
tests/test_post_evaluation.py
tests/test_vinadocking.py
tests/celpp/__init__.py
tests/celpp/test_blastnfilter.py
tests/celpp/test_challengedata.py
tests/celpp/test_chimeraprep.py
tests/celpp/test_class_ftpfiletransfer.py
tests/celpp/test_class_webdavfiletransfer.py
tests/celpp/test_dataimport.py
tests/celpp/test_eval_chain_permuter.py
tests/celpp/test_evaluation.py
tests/celpp/test_extsubmission.py
tests/celpp/test_filetransfer.py
tests/celpp/test_glide.py
tests/celpp/test_makeblastdb.py
tests/celpp/test_participant.py
tests/celpp/test_postevaluation.py
tests/celpp/test_proteinligprep.py
tests/celpp/test_task.py
tests/celpp/test_util.py
tests/celpp/test_vina.py
tests/celpp/eval_test_data/github_test_data/mini_pdb/t6/pdb5t6d.ent
tests/celpp/eval_test_data/github_test_data/stage.6.autodockvina/5t6d/hiResApo-5t6d_3ur6_docked.mol
tests/celpp/eval_test_data/github_test_data/stage.6.autodockvina/5t6d/hiResApo-5t6d_3ur6_docked.pdb
tests/celppade/__init__.py
tests/celppade/test_custom_dock.py
tests/utilities/__init__.py
tests/utilities/test_in_put.py
tests/utilities/test_readers.py
tests/utilities/test_run.py