LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
cyvcf2/__init__.py
cyvcf2/__main__.py
cyvcf2/cli.py
cyvcf2/cyvcf2.c
cyvcf2/cyvcf2.pxd
cyvcf2/cyvcf2.pyx
cyvcf2/helpers.c
cyvcf2/helpers.h
cyvcf2/relatedness.h
cyvcf2.egg-info/PKG-INFO
cyvcf2.egg-info/SOURCES.txt
cyvcf2.egg-info/dependency_links.txt
cyvcf2.egg-info/entry_points.txt
cyvcf2.egg-info/not-zip-safe
cyvcf2.egg-info/requires.txt
cyvcf2.egg-info/top_level.txt
cyvcf2/tests/__init__.py
cyvcf2/tests/__init__.pyc
cyvcf2/tests/bug.vcf.gz
cyvcf2/tests/empty.vcf
cyvcf2/tests/issue_44.vcf
cyvcf2/tests/o.vcf.gz
cyvcf2/tests/seg.vcf.gz
cyvcf2/tests/test-format-string.vcf
cyvcf2/tests/test-haploidX.vcf
cyvcf2/tests/test-hemi.vcf
cyvcf2/tests/test-issue-48.vcf.gz
cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz
cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi
cyvcf2/tests/test-strict-gt-option-flag.vcf.gz
cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi
cyvcf2/tests/test.comp_het.3.vcf
cyvcf2/tests/test.snpeff.bcf
cyvcf2/tests/test.snpeff.bcf.csi
cyvcf2/tests/test.snpeff.vcf
cyvcf2/tests/test.vcf.gz
cyvcf2/tests/test.vcf.gz.tbi
cyvcf2/tests/test_gt_alt_freqs.vcf
cyvcf2/tests/test_gt_bases.vcf.gz
cyvcf2/tests/test_hemi.py
cyvcf2/tests/test_hemi.pyc
cyvcf2/tests/test_reader.py
cyvcf2/tests/test_reader.pyc
htslib/bgzf.c
htslib/bgzip.c
htslib/config.h
htslib/errmod.c
htslib/faidx.c
htslib/hfile.c
htslib/hfile_internal.h
htslib/hfile_irods.c
htslib/hfile_net.c
htslib/hts.c
htslib/hts_internal.h
htslib/htsfile.c
htslib/kfunc.c
htslib/knetfile.c
htslib/kstring.c
htslib/md5.c
htslib/plugin.c
htslib/probaln.c
htslib/realn.c
htslib/regidx.c
htslib/sam.c
htslib/synced_bcf_reader.c
htslib/tabix.c
htslib/tbx.c
htslib/vcf.c
htslib/vcf_sweep.c
htslib/vcfutils.c
htslib/version.h
htslib/cram/cram.h
htslib/cram/cram_codecs.c
htslib/cram/cram_codecs.h
htslib/cram/cram_decode.c
htslib/cram/cram_decode.h
htslib/cram/cram_encode.c
htslib/cram/cram_encode.h
htslib/cram/cram_external.c
htslib/cram/cram_index.c
htslib/cram/cram_index.h
htslib/cram/cram_io.c
htslib/cram/cram_io.h
htslib/cram/cram_samtools.c
htslib/cram/cram_samtools.h
htslib/cram/cram_stats.c
htslib/cram/cram_stats.h
htslib/cram/cram_structs.h
htslib/cram/files.c
htslib/cram/mFILE.c
htslib/cram/mFILE.h
htslib/cram/misc.h
htslib/cram/open_trace_file.c
htslib/cram/open_trace_file.h
htslib/cram/os.h
htslib/cram/pooled_alloc.c
htslib/cram/pooled_alloc.h
htslib/cram/rANS_byte.h
htslib/cram/rANS_static.c
htslib/cram/rANS_static.h
htslib/cram/sam_header.c
htslib/cram/sam_header.h
htslib/cram/string_alloc.c
htslib/cram/string_alloc.h
htslib/cram/thread_pool.c
htslib/cram/thread_pool.h
htslib/cram/vlen.c
htslib/cram/vlen.h
htslib/cram/zfio.c
htslib/cram/zfio.h
htslib/htslib/bgzf.h
htslib/htslib/cram.h
htslib/htslib/faidx.h
htslib/htslib/hfile.h
htslib/htslib/hts.h
htslib/htslib/hts_defs.h
htslib/htslib/kbitset.h
htslib/htslib/kfunc.h
htslib/htslib/khash.h
htslib/htslib/khash_str2int.h
htslib/htslib/klist.h
htslib/htslib/knetfile.h
htslib/htslib/kseq.h
htslib/htslib/ksort.h
htslib/htslib/kstring.h
htslib/htslib/regidx.h
htslib/htslib/sam.h
htslib/htslib/synced_bcf_reader.h
htslib/htslib/tbx.h
htslib/htslib/vcf.h
htslib/htslib/vcf_sweep.h
htslib/htslib/vcfutils.h