README.md
setup.py
crispy/Bedit.py
crispy/CRISPRData.py
crispy/CircularBinarySegmentation.py
crispy/CopyNumberCorrection.py
crispy/CrispyPlot.py
crispy/DataImporter.py
crispy/Enrichment.py
crispy/GuideDesign.py
crispy/LibRepresentationReport.py
crispy/QCPlot.py
crispy/Utils.py
crispy/__init__.py
cy.egg-info/PKG-INFO
cy.egg-info/SOURCES.txt
cy.egg-info/dependency_links.txt
cy.egg-info/requires.txt
cy.egg-info/top_level.txt
data/__init__.py
notebooks/__init__.py
notebooks/HAP1_WRN/QualityControl.py
notebooks/HAP1_WRN/__init__.py
notebooks/bedit/__init__.py
notebooks/bedit/bedit_lib_jak.py
notebooks/bedit/fastq_count.py
notebooks/bme/QualityControl.py
notebooks/bme/__init__.py
notebooks/depmap/__init__.py
notebooks/depmap/gexp.py
notebooks/dualguide/__init__.py
notebooks/dualguide/assemble_library.py
notebooks/dualguide/comparisons_227.py
notebooks/dualguide/fastq_count.py
notebooks/dualguide/fastq_count_227.py
notebooks/dualguide/moi.py
notebooks/minlib/Fig1.GuidesDistributions.py
notebooks/minlib/Fig1.LibrarySizes.py
notebooks/minlib/Fig2.FigSupp4.MinimalLibraryBenchmark.py
notebooks/minlib/FigSupp1.DownsampleKY.py
notebooks/minlib/FigSupp2.MetricsScatters.py
notebooks/minlib/FigSupp3.MetricsRecall.py
notebooks/minlib/FigSupp4.MinimalLibraryDownsample.py
notebooks/minlib/FigSupp5.GuideCoverage.py
notebooks/minlib/FigSupp6.DabrafHT29.py
notebooks/minlib/FigSupp7.Organoids.py
notebooks/minlib/MasterLibrary.py
notebooks/minlib/MinimalLibrary.py
notebooks/minlib/Utils.py
notebooks/minlib/__init__.py
notebooks/sarah/LibRepresentationReport.py
notebooks/sarah/QualityControl.py
notebooks/sarah/__init__.py
notebooks/swath_proteomics/0.IntegrationGExp.py
notebooks/swath_proteomics/0.QualityControl.py
notebooks/swath_proteomics/1.BiasDetectedProteins.py
notebooks/swath_proteomics/1.GIProt.py
notebooks/swath_proteomics/1.GexpProtCorrelation.py
notebooks/swath_proteomics/1.SLinteractions.py
notebooks/swath_proteomics/1.SLinteractionsGExpMut.py
notebooks/swath_proteomics/GIPlot.py
notebooks/swath_proteomics/SLethal.py
notebooks/swath_proteomics/__init__.py
notebooks/wrn_proteomics/QC_Proteomics.py
notebooks/wrn_proteomics/__init__.py
notebooks/wrn_proteomics/reports/__init__.py
scripts/__init__.py
scripts/crispr_drug.py
scripts/analysis/BiasAnalysis.py
scripts/analysis/ChromosomePlots.py
scripts/analysis/ComparisonPlots.py
scripts/analysis/DataImporter.py
scripts/analysis/DataImporterWGS.py
scripts/analysis/GPexample.py
scripts/analysis/RatioExample.py
scripts/analysis/RatioGSEA.py
scripts/analysis/__init__.py
scripts/bedit/MiteScreen.py
scripts/bedit/__init__.py
scripts/bedit/base_editing.py
scripts/bedit/tp53_screen.py
scripts/rescue/MageckOutput.py
scripts/rescue/RawCountPlots.py
scripts/rescue/RawCountsPlotsGene.py
scripts/rescue/__init__.py
scripts/rescue/processing.py
test/__init__.py
test/example.py