CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE.txt
MANIFEST.in
Makefile
README.rst
cwltool.py
gittaggers.py
lint-requirements.txt
mypy-requirements.txt
mypy.ini
requirements.txt
setup.cfg
setup.py
test-requirements.txt
tox.ini
cwltool/__init__.py
cwltool/__main__.py
cwltool/argparser.py
cwltool/builder.py
cwltool/checker.py
cwltool/command_line_tool.py
cwltool/context.py
cwltool/cuda.py
cwltool/cwlNodeEngine.js
cwltool/cwlNodeEngineJSConsole.js
cwltool/cwlNodeEngineWithContext.js
cwltool/cwlrdf.py
cwltool/cwlviewer.py
cwltool/docker.py
cwltool/docker_id.py
cwltool/env_to_stdout.py
cwltool/errors.py
cwltool/executors.py
cwltool/expression.py
cwltool/extensions-v1.1.yml
cwltool/extensions.yml
cwltool/factory.py
cwltool/flatten.py
cwltool/hello.simg
cwltool/job.py
cwltool/load_tool.py
cwltool/loghandler.py
cwltool/main.py
cwltool/mpi.py
cwltool/mutation.py
cwltool/pack.py
cwltool/pathmapper.py
cwltool/process.py
cwltool/procgenerator.py
cwltool/provenance.py
cwltool/provenance_constants.py
cwltool/provenance_profile.py
cwltool/py.typed
cwltool/resolver.py
cwltool/run_job.py
cwltool/sandboxjs.py
cwltool/secrets.py
cwltool/singularity.py
cwltool/singularity_utils.py
cwltool/software_requirements.py
cwltool/stdfsaccess.py
cwltool/subgraph.py
cwltool/task_queue.py
cwltool/udocker.py
cwltool/update.py
cwltool/utils.py
cwltool/validate_js.py
cwltool/workflow.py
cwltool/workflow_job.py
cwltool.egg-info/PKG-INFO
cwltool.egg-info/SOURCES.txt
cwltool.egg-info/dependency_links.txt
cwltool.egg-info/entry_points.txt
cwltool.egg-info/requires.txt
cwltool.egg-info/top_level.txt
cwltool.egg-info/zip-safe
cwltool/jshint/jshint.js
cwltool/jshint/jshint_wrapper.js
cwltool/rdfqueries/get_inner_edges.sparql
cwltool/rdfqueries/get_input_edges.sparql
cwltool/rdfqueries/get_output_edges.sparql
cwltool/rdfqueries/get_root.sparql
cwltool/schemas/v1.0/CommandLineTool-standalone.yml
cwltool/schemas/v1.0/CommandLineTool.yml
cwltool/schemas/v1.0/CommonWorkflowLanguage.yml
cwltool/schemas/v1.0/Process.yml
cwltool/schemas/v1.0/README.md
cwltool/schemas/v1.0/UserGuide.yml
cwltool/schemas/v1.0/Workflow.yml
cwltool/schemas/v1.0/concepts.md
cwltool/schemas/v1.0/contrib.md
cwltool/schemas/v1.0/intro.md
cwltool/schemas/v1.0/invocation.md
cwltool/schemas/v1.0/userguide-intro.md
cwltool/schemas/v1.0/salad/schema_salad/metaschema/field_name.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/field_name_proc.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/field_name_schema.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/field_name_src.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/ident_res.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/ident_res_proc.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/ident_res_schema.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/ident_res_src.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/import_include.md
cwltool/schemas/v1.0/salad/schema_salad/metaschema/link_res.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/link_res_proc.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/link_res_schema.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/link_res_src.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/map_res.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/map_res_proc.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/map_res_schema.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/map_res_src.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/metaschema.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/metaschema_base.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/salad.md
cwltool/schemas/v1.0/salad/schema_salad/metaschema/typedsl_res.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/typedsl_res_proc.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/typedsl_res_schema.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/typedsl_res_src.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/vocab_res.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/vocab_res_proc.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/vocab_res_schema.yml
cwltool/schemas/v1.0/salad/schema_salad/metaschema/vocab_res_src.yml
cwltool/schemas/v1.1/CODE_OF_CONDUCT.md
cwltool/schemas/v1.1/CONFORMANCE_TESTS.md
cwltool/schemas/v1.1/CommandLineTool-standalone.yml
cwltool/schemas/v1.1/CommandLineTool.yml
cwltool/schemas/v1.1/CommonWorkflowLanguage.yml
cwltool/schemas/v1.1/Process.yml
cwltool/schemas/v1.1/README.md
cwltool/schemas/v1.1/Workflow.yml
cwltool/schemas/v1.1/concepts.md
cwltool/schemas/v1.1/contrib.md
cwltool/schemas/v1.1/index.md
cwltool/schemas/v1.1/intro.md
cwltool/schemas/v1.1/invocation.md
cwltool/schemas/v1.1.0-dev1/CommandLineTool-standalone.yml
cwltool/schemas/v1.1.0-dev1/CommandLineTool.yml
cwltool/schemas/v1.1.0-dev1/CommonWorkflowLanguage.yml
cwltool/schemas/v1.1.0-dev1/Process.yml
cwltool/schemas/v1.1.0-dev1/README.md
cwltool/schemas/v1.1.0-dev1/Workflow.yml
cwltool/schemas/v1.1.0-dev1/concepts.md
cwltool/schemas/v1.1.0-dev1/contrib.md
cwltool/schemas/v1.1.0-dev1/intro.md
cwltool/schemas/v1.1.0-dev1/invocation.md
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/field_name.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/field_name_proc.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/field_name_schema.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/field_name_src.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/ident_res.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/ident_res_proc.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/ident_res_schema.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/ident_res_src.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/import_include.md
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/link_res.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/link_res_proc.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/link_res_schema.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/link_res_src.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/map_res.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/map_res_proc.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/map_res_schema.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/map_res_src.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/metaschema.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/metaschema_base.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/salad.md
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/typedsl_res.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/typedsl_res_proc.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/typedsl_res_schema.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/typedsl_res_src.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/vocab_res.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/vocab_res_proc.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/vocab_res_schema.yml
cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/vocab_res_src.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/field_name.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/field_name_proc.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/field_name_schema.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/field_name_src.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/ident_res.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/ident_res_proc.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/ident_res_schema.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/ident_res_src.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/import_include.md
cwltool/schemas/v1.1/salad/schema_salad/metaschema/link_res.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/link_res_proc.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/link_res_schema.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/link_res_src.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/map_res.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/map_res_proc.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/map_res_schema.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/map_res_src.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/metaschema.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/metaschema_base.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/salad.md
cwltool/schemas/v1.1/salad/schema_salad/metaschema/typedsl_res.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/typedsl_res_proc.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/typedsl_res_schema.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/typedsl_res_src.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/vocab_res.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/vocab_res_proc.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/vocab_res_schema.yml
cwltool/schemas/v1.1/salad/schema_salad/metaschema/vocab_res_src.yml
cwltool/schemas/v1.2/CODE_OF_CONDUCT.md
cwltool/schemas/v1.2/CONFORMANCE_TESTS.md
cwltool/schemas/v1.2/CommandLineTool-standalone.yml
cwltool/schemas/v1.2/CommandLineTool.yml
cwltool/schemas/v1.2/CommonWorkflowLanguage.yml
cwltool/schemas/v1.2/Operation.yml
cwltool/schemas/v1.2/Process.yml
cwltool/schemas/v1.2/README.md
cwltool/schemas/v1.2/Workflow.yml
cwltool/schemas/v1.2/concepts.md
cwltool/schemas/v1.2/contrib.md
cwltool/schemas/v1.2/index.md
cwltool/schemas/v1.2/intro.md
cwltool/schemas/v1.2/invocation.md
cwltool/schemas/v1.2.0-dev2/CommandLineTool-standalone.yml
cwltool/schemas/v1.2.0-dev2/CommandLineTool.yml
cwltool/schemas/v1.2.0-dev2/CommonWorkflowLanguage.yml
cwltool/schemas/v1.2.0-dev2/Operation.yml
cwltool/schemas/v1.2.0-dev2/Process.yml
cwltool/schemas/v1.2.0-dev2/README.md
cwltool/schemas/v1.2.0-dev2/Workflow.yml
cwltool/schemas/v1.2.0-dev2/concepts.md
cwltool/schemas/v1.2.0-dev2/contrib.md
cwltool/schemas/v1.2.0-dev2/intro.md
cwltool/schemas/v1.2.0-dev2/invocation.md
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/field_name.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/field_name_proc.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/field_name_schema.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/field_name_src.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/ident_res.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/ident_res_proc.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/ident_res_schema.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/ident_res_src.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/import_include.md
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/link_res.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/link_res_proc.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/link_res_schema.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/link_res_src.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/map_res.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/map_res_proc.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/map_res_schema.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/map_res_src.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/metaschema.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/metaschema_base.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/salad.md
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/sfdsl_res.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/sfdsl_res_proc.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/sfdsl_res_schema.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/sfdsl_res_src.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/typedsl_res.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/typedsl_res_proc.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/typedsl_res_schema.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/typedsl_res_src.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/vocab_res.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/vocab_res_proc.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/vocab_res_schema.yml
cwltool/schemas/v1.2.0-dev2/salad/schema_salad/metaschema/vocab_res_src.yml
cwltool/schemas/v1.2.0-dev3/CommandLineTool-standalone.yml
cwltool/schemas/v1.2.0-dev3/CommandLineTool.yml
cwltool/schemas/v1.2.0-dev3/CommonWorkflowLanguage.yml
cwltool/schemas/v1.2.0-dev3/Operation.yml
cwltool/schemas/v1.2.0-dev3/Process.yml
cwltool/schemas/v1.2.0-dev3/README.md
cwltool/schemas/v1.2.0-dev3/Workflow.yml
cwltool/schemas/v1.2.0-dev3/concepts.md
cwltool/schemas/v1.2.0-dev3/contrib.md
cwltool/schemas/v1.2.0-dev3/index.md
cwltool/schemas/v1.2.0-dev3/intro.md
cwltool/schemas/v1.2.0-dev3/invocation.md
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/field_name.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/field_name_proc.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/field_name_schema.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/field_name_src.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/ident_res.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/ident_res_proc.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/ident_res_schema.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/ident_res_src.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/import_include.md
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/link_res.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/link_res_proc.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/link_res_schema.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/link_res_src.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/map_res.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/map_res_proc.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/map_res_schema.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/map_res_src.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/metaschema.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/metaschema_base.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/salad.md
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/sfdsl_res.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/sfdsl_res_proc.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/sfdsl_res_schema.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/sfdsl_res_src.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/typedsl_res.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/typedsl_res_proc.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/typedsl_res_schema.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/typedsl_res_src.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/vocab_res.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/vocab_res_proc.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/vocab_res_schema.yml
cwltool/schemas/v1.2.0-dev3/salad/schema_salad/metaschema/vocab_res_src.yml
cwltool/schemas/v1.2.0-dev4/CODE_OF_CONDUCT.md
cwltool/schemas/v1.2.0-dev4/CONFORMANCE_TESTS.md
cwltool/schemas/v1.2.0-dev4/CommandLineTool-standalone.yml
cwltool/schemas/v1.2.0-dev4/CommandLineTool.yml
cwltool/schemas/v1.2.0-dev4/CommonWorkflowLanguage.yml
cwltool/schemas/v1.2.0-dev4/Operation.yml
cwltool/schemas/v1.2.0-dev4/Process.yml
cwltool/schemas/v1.2.0-dev4/README.md
cwltool/schemas/v1.2.0-dev4/Workflow.yml
cwltool/schemas/v1.2.0-dev4/concepts.md
cwltool/schemas/v1.2.0-dev4/contrib.md
cwltool/schemas/v1.2.0-dev4/index.md
cwltool/schemas/v1.2.0-dev4/intro.md
cwltool/schemas/v1.2.0-dev4/invocation.md
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/field_name.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/field_name_proc.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/field_name_schema.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/field_name_src.yml
cwltool/schemas/v1.2.0-dev4/salad/schema_salad/metaschema/ident_res.yml
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