MANIFEST.in
README.md
setup.cfg
setup.py
cwl_airflow/__init__.py
cwl_airflow/create_dag.py
cwl_airflow/git_version
cwl_airflow/main.py
cwl_airflow.egg-info/PKG-INFO
cwl_airflow.egg-info/SOURCES.txt
cwl_airflow.egg-info/dependency_links.txt
cwl_airflow.egg-info/entry_points.txt
cwl_airflow.egg-info/not-zip-safe
cwl_airflow.egg-info/requires.txt
cwl_airflow.egg-info/top_level.txt
cwl_airflow/dag_components/__init__.py
cwl_airflow/dag_components/cwldag.py
cwl_airflow/dag_components/cwlstepoperator.py
cwl_airflow/dag_components/jobcleanup.py
cwl_airflow/dag_components/jobdispatcher.py
cwl_airflow/tests/cwl/subworkflows/bam-bedgraph-bigwig.cwl
cwl_airflow/tests/cwl/tools/atdp.cwl
cwl_airflow/tests/cwl/tools/bedtools-genomecov.cwl
cwl_airflow/tests/cwl/tools/bowtie-alignreads.cwl
cwl_airflow/tests/cwl/tools/custom-bash.cwl
cwl_airflow/tests/cwl/tools/extract-fastq.cwl
cwl_airflow/tests/cwl/tools/fastqc-results-trigger.cwl
cwl_airflow/tests/cwl/tools/fastqc.cwl
cwl_airflow/tests/cwl/tools/fastx-quality-stats.cwl
cwl_airflow/tests/cwl/tools/get-file-by-name.cwl
cwl_airflow/tests/cwl/tools/iaintersect.cwl
cwl_airflow/tests/cwl/tools/linux-sort.cwl
cwl_airflow/tests/cwl/tools/macs2-callpeak-biowardrobe-only.cwl
cwl_airflow/tests/cwl/tools/makegff.cwl
cwl_airflow/tests/cwl/tools/python-get-stat-chipseq.cwl
cwl_airflow/tests/cwl/tools/python-make-biowardrobe-isoforms.cwl
cwl_airflow/tests/cwl/tools/rename.cwl
cwl_airflow/tests/cwl/tools/rose.cwl
cwl_airflow/tests/cwl/tools/rsem-calculate-expression.cwl
cwl_airflow/tests/cwl/tools/samtools-rmdup.cwl
cwl_airflow/tests/cwl/tools/samtools-sort-index.cwl
cwl_airflow/tests/cwl/tools/trimmomatic.cwl
cwl_airflow/tests/cwl/tools/ucsc-bedgraphtobigwig.cwl
cwl_airflow/tests/cwl/tools/ucsc-bedtobigbed.cwl
cwl_airflow/tests/cwl/workflows/chipseq-se.cwl
cwl_airflow/tests/cwl/workflows/super-enhancer.cwl
cwl_airflow/tests/cwl/workflows/xenbase-rnaseq-se.cwl
cwl_airflow/tests/data/TruSeq3-SE.fa
cwl_airflow/tests/data/chr4_100_mapped_reads.Aligned.out.bam
cwl_airflow/tests/data/chr4_100_mapped_reads.Aligned.out.bam.bai
cwl_airflow/tests/data/chr4_100_mapped_reads.Aligned.out_macs_peaks_iaintersect.tsv
cwl_airflow/tests/data/chrNameLength.txt
cwl_airflow/tests/data/dm3_chr4.tsv
cwl_airflow/tests/data/upstream.fastq
cwl_airflow/tests/data/bowtie_dm3_chr4/bowtie-build.json
cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.1.ebwt
cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.2.ebwt
cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.3.ebwt
cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.4.ebwt
cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.rev.1.ebwt
cwl_airflow/tests/data/bowtie_dm3_chr4/dm3_chr4.rev.2.ebwt
cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.1.ebwt
cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.2.ebwt
cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.3.ebwt
cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.4.ebwt
cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.log
cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.rev.1.ebwt
cwl_airflow/tests/data/bowtie_dm3_ribo/dm3_chr4.rev.2.ebwt
cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.1.bt2
cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.2.bt2
cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.3.bt2
cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.4.bt2
cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.chrlist
cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.grp
cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.idx.fa
cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.n2g.idx.fa
cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.rev.1.bt2
cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.rev.2.bt2
cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.seq
cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.ti
cwl_airflow/tests/data/rsem_bowtie2_dm3_chr4/dm3_chr4.transcripts.fa
cwl_airflow/tests/job/chipseq-se.json
cwl_airflow/tests/job/super-enhancer.json
cwl_airflow/tests/job/xenbase-rnaseq-se.json
cwl_airflow/utils/__init__.py
cwl_airflow/utils/func.py
cwl_airflow/utils/logger.py
cwl_airflow/utils/mute.py
cwl_airflow/utils/utils.py