.gitignore
.readthedocs.yaml
CITATION.cff
CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE
NOTICE.md
README.md
pyproject.toml
tox.ini
.github/workflows/build.yml
.github/workflows/release.yml
.helpers/Dockerfile
cvasl/.RData
cvasl/CVASL_RELIEF.R
cvasl/CVASL_RELIEF_DRIVER.R
cvasl/__init__.py
cvasl/__main__.py
cvasl/_version.py
cvasl/combatPP.R
cvasl/dataset.py
cvasl/harmonizer_cli.py
cvasl/harmonizers.py
cvasl/harmony.py.old.py
cvasl/params.yaml
cvasl/prediction.py
cvasl/seperated.py.old
cvasl/utils.R
cvasl.egg-info/PKG-INFO
cvasl.egg-info/SOURCES.txt
cvasl.egg-info/dependency_links.txt
cvasl.egg-info/requires.txt
cvasl.egg-info/top_level.txt
cvasl/deepresearch/.pylintrc
cvasl/deepresearch/__init__.py
cvasl/deepresearch/data.py
cvasl/deepresearch/job.sh
cvasl/deepresearch/jobxai.sh
cvasl/deepresearch/test_stats.py
cvasl/deepresearch/train.py
cvasl/deepresearch/utils.py
cvasl/deepresearch/xai.py
cvasl/deepresearch/Harvard-Oxford_cortical_and_subcortical_structural_atlases/HarvardOxford-cort-maxprob-thr0-1mm.nii.gz
cvasl/deepresearch/Harvard-Oxford_cortical_and_subcortical_structural_atlases/HarvardOxford-cort-maxprob-thr0-2mm.nii.gz
cvasl/deepresearch/Harvard-Oxford_cortical_and_subcortical_structural_atlases/HarvardOxford-cort-maxprob-thr25-1mm.nii.gz
cvasl/deepresearch/Harvard-Oxford_cortical_and_subcortical_structural_atlases/HarvardOxford-cort-maxprob-thr25-2mm.nii.gz
cvasl/deepresearch/Harvard-Oxford_cortical_and_subcortical_structural_atlases/HarvardOxford-cort-maxprob-thr50-1mm.nii.gz
cvasl/deepresearch/Harvard-Oxford_cortical_and_subcortical_structural_atlases/HarvardOxford-cort-maxprob-thr50-2mm.nii.gz
cvasl/deepresearch/Harvard-Oxford_cortical_and_subcortical_structural_atlases/HarvardOxford-cort_and_sub-maxprob-thr25-1mm.nii.gz.nii.gz
cvasl/deepresearch/Harvard-Oxford_cortical_and_subcortical_structural_atlases/HarvardOxford-cort_and_sub-maxprob-thr25-1mm.nii.gz_1.nii.gz
cvasl/deepresearch/Harvard-Oxford_cortical_and_subcortical_structural_atlases/HarvardOxford-sub-maxprob-thr0-1mm.nii.gz
cvasl/deepresearch/Harvard-Oxford_cortical_and_subcortical_structural_atlases/HarvardOxford-sub-maxprob-thr0-2mm.nii.gz
cvasl/deepresearch/Harvard-Oxford_cortical_and_subcortical_structural_atlases/HarvardOxford-sub-maxprob-thr25-1mm.nii.gz
cvasl/deepresearch/Harvard-Oxford_cortical_and_subcortical_structural_atlases/HarvardOxford-sub-maxprob-thr25-2mm.nii.gz
cvasl/deepresearch/Harvard-Oxford_cortical_and_subcortical_structural_atlases/HarvardOxford-sub-maxprob-thr50-1mm.nii.gz
cvasl/deepresearch/Harvard-Oxford_cortical_and_subcortical_structural_atlases/HarvardOxford-sub-maxprob-thr50-2mm.nii.gz
cvasl/deepresearch/models/__init__.py
cvasl/deepresearch/models/cnn.py
cvasl/deepresearch/models/densenet3d.py
cvasl/deepresearch/models/efficientnet3d.py
cvasl/deepresearch/models/improvedcnn3d.py
cvasl/deepresearch/models/loss.py
cvasl/deepresearch/models/resnet3d.py
cvasl/deepresearch/models/resnext3d.py
cvasl/deepresearch/models/vit3d.py
cvasl/deepresearch/models/VascularAttention/__init__.py
cvasl/deepresearch/models/VascularAttention/attention.py
cvasl/deepresearch/models/VascularAttention/augmentation.py
cvasl/deepresearch/models/VascularAttention/contrastive_loss.py
cvasl/tutorial/runharmonize.py
cvasl/tutorial/runprediction.py
cvasl/vendor/__init__.py
cvasl/vendor/ComBat++/README.md
cvasl/vendor/ComBat++/Renvironment.yml
cvasl/vendor/ComBat++/Untitled.ipynb
cvasl/vendor/ComBat++/combatPP.R
cvasl/vendor/ComBat++/utils.R
cvasl/vendor/RELIEF/.DS_Store
cvasl/vendor/RELIEF/.Rbuildignore
cvasl/vendor/RELIEF/.gitignore
cvasl/vendor/RELIEF/DESCRIPTION
cvasl/vendor/RELIEF/NAMESPACE
cvasl/vendor/RELIEF/README.md
cvasl/vendor/RELIEF/RELIEF.R
cvasl/vendor/RELIEF/relief_environment.yaml
cvasl/vendor/comscan/LICENSE
cvasl/vendor/comscan/README.rst
cvasl/vendor/comscan/__init__.py
cvasl/vendor/comscan/clustering.py
cvasl/vendor/comscan/comscan_environment.yml
cvasl/vendor/comscan/looser_comscan.yml
cvasl/vendor/comscan/neurocombat.py
cvasl/vendor/comscan/nifti.py
cvasl/vendor/comscan/utils.py
cvasl/vendor/covbat/README.md
cvasl/vendor/covbat/covbat.py
cvasl/vendor/covbat/covbat_environment.yml
cvasl/vendor/neurocombat/LICENSE
cvasl/vendor/neurocombat/README.md
cvasl/vendor/neurocombat/__init__.py
cvasl/vendor/neurocombat/neurocombat.py
cvasl/vendor/open_nested_combat/LICENSE
cvasl/vendor/open_nested_combat/README.md
cvasl/vendor/open_nested_combat/__init__.py
cvasl/vendor/open_nested_combat/nest.py
cvasl/vendor/open_nested_combat/requirements.txt
docs/conf.py
docs/cvasl.carve.rst
docs/cvasl.cli.rst
docs/cvasl.file_handler.rst
docs/cvasl.harmony.rst
docs/cvasl.mold.rst
docs/cvasl.rst
docs/cvasl.seperated.rst
docs/developers.rst
docs/index.rst
docs/medical-professionals.rst
docs/modules.rst
docs/_static/basic.css
docs/_static/basic_mod.css
tests/__init__.py
tests/conftest.py
tests/test_basics.py
tests/data/TestingData_Site1_fake.csv
tests/data/TestingData_Site2_fake.csv
tests/data/TrainingData_Site1_fake.csv