Metadata-Version: 2.1
Name: cutevariant
Version: 0.1.7
Summary: GUI to visualize and process variant data
Home-page: https://github.com/labsquare/CuteVariant-python
Author: Sacha Schutz
Author-email: sacha@labsquare.org
License: GPL
Keywords: GUI,health
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Healthcare Industry
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Requires-Dist: PySide2 (==5.11.2)
Requires-Dist: PyVCF (==0.6.8)
Requires-Dist: ipython (==7.1.1)
Provides-Extra: dev
Requires-Dist: pytest-cov (==2.6.1) ; extra == 'dev'
Requires-Dist: pytest-qt (==3.2.2) ; extra == 'dev'
Requires-Dist: pytest (==4.0.1) ; extra == 'dev'
Requires-Dist: textX (==1.8.0) ; extra == 'dev'
Requires-Dist: pytest-runner ; extra == 'dev'

# Cutevariant

cutevariant is a light standalone viewer of genetic variation written in Python for Qt. It allows you to view and filter VCF and other format files.

![Cutevariant example](https://raw.githubusercontent.com/labsquare/CuteVariant-cpp/master/screencast.gif)

# Installation

    pip install cutevariant # install
    cutevariant             # run


## Developement in progress
Complete rewrite from Cpp to Python 

###  To get tests running

	git clone git@github.com:labsquare/cutevariant.git
	cd cutevariant
	virtualenv -p /usr/bin/python3 venv
	source ven/bin/activate
	make install_deps # install
	make run     # start application
	make test    # start tests


### Development & release cycle

Use [zest.releaser](https://zestreleaser.readthedocs.io) to handle the version and distribution through pypi.

    pip install zest.releaser[recommended]

To yield a new release, use:

    fullrelease


