Metadata-Version: 2.1
Name: cutevariant
Version: 0.1.12
Summary: GUI to visualize and process variant data
Home-page: https://github.com/labsquare/CuteVariant-python
Author: Sacha Schutz
Author-email: sacha@labsquare.org
License: GPL
Description: # Cutevariant
        
        cutevariant is a light standalone viewer of genetic variation written in Python for Qt. It allows you to view and filter VCF and other format files.
        
        ![Cutevariant example](https://raw.githubusercontent.com/labsquare/CuteVariant-cpp/master/screencast.gif)
        
        # Installation
        
            pip install cutevariant # install
            cutevariant             # run
        
        # Installation on Windows
        
        Pyside2 is not currently (2019 May) functional on Cygwin, so Cutevariant will not work on Cygwin.
        
        - Install Python3.6+
        - Install like the previous chapter said.
        - Add the path of python scripts executables to your PATH variable; Something like:
        
        ``` C:\Users\<username>\AppData\Roaming\Python\Python37\Scripts\ ``` 
        
        Two executables are generated in this directory:
        
            - cutevariant_win_dbg.exe: Open a console in background to see debugging messages.
            
            Note: Qt libs seems to have a very high loglevel and such a verbosity could make the program unusable.
        
            - cutevariant.exe: Standard executable.
        
        
        ## Developement in progress
        
        Complete rewriting from Cpp to Python.
        
        ###  To get tests running
        
            git clone git@github.com:labsquare/cutevariant.git
            cd cutevariant
            virtualenv -p /usr/bin/python3 venv
            source ven/bin/activate
            make install_deps # install
            make run     # start application
            make test    # start tests
        
        
        ### Development & release cycle
        
        Use [zest.releaser](https://zestreleaser.readthedocs.io) to handle the version and distribution through pypi.
        
            pip install zest.releaser[recommended]
        
        To yield a new release, use:
        
            fullrelease
        
        ### Development on Windows (good luck)
        
        - Install Python3.6+
        - Install git
        - Install make (optional)
        
            pip install wheel
            git clone https://github.com/ysard/cutevariant.git
            git fetch
            git checkout dev # or devel
            make install # or pip install --user -e .[dev]
        
        Executable files are located here:
        
        - Executable path:
            C:\Users\<username>\AppData\Roaming\Python\Python37\Scripts\cutevariant.exe
        
        
        ### Build standalone program/archive/blob[add synonyms here] on Windows using cx_freeze
        
        Strongly discouraged: You will generate an archive of 350Mo just for a program of
        less than 900Ko (including 550Ko of fonts and icons).
        
        Install cx_freeze:
        
            pip install cx_freeze
        
        Build a blob:
        
            make build_windows_blob
        
        Your blob is in `./build/` directory.
        
Keywords: GUI,health
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Healthcare Industry
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Description-Content-Type: text/markdown
Provides-Extra: dev
