.gitignore
.pre-commit-config.yaml
LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
tox.ini
.github/workflows/test_and_deploy.yml
.napari-hub/DESCRIPTION.md
.napari-hub/config.yml
developers/README.md
developers/ground_truth_generation/annotations_upload.py
developers/ground_truth_generation/check_cell_counter_file.py
developers/ground_truth_generation/bridges/extract_images_from_cell_counter.py
developers/ground_truth_generation/bridges/semi_images_generation/generate_semi_images.py
developers/ground_truth_generation/bridges/semi_images_generation/micro_tubules_augmentations_advanced.py
developers/ground_truth_generation/bridges/semi_images_generation/mt_cut_detection_factory_advanced.py
developers/ground_truth_generation/bridges/semi_images_generation/peak.py
developers/ground_truth_generation/cell_division_detection/annotate_metaphase.py
developers/ground_truth_generation/cell_division_detection/extract_images_from_xml.py
developers/ground_truth_generation/segmentation/random_frames_extractor.py
developers/images/CellCounter_annotations.png
developers/images/CellCounter_categories.png
developers/training_and_evaluation/binary_bridges_cnn/bridges_parser.py
developers/training_and_evaluation/binary_bridges_cnn/data_set.py
developers/training_and_evaluation/binary_bridges_cnn/data_set_inference.py
developers/training_and_evaluation/binary_bridges_cnn/evaluate.py
developers/training_and_evaluation/binary_bridges_cnn/evaluate_inference.py
developers/training_and_evaluation/binary_bridges_cnn/model_params.py
developers/training_and_evaluation/binary_bridges_cnn/tools.py
developers/training_and_evaluation/binary_bridges_cnn/train.py
developers/training_and_evaluation/metaphase_cnn/data_set.py
developers/training_and_evaluation/metaphase_cnn/evaluate.py
developers/training_and_evaluation/metaphase_cnn/train.py
playground/mid_body_detection.py
playground/mitosis_track_generation.py
playground/mt_cut_detection.py
playground/napari_layer.py
playground/segmentation.py
playground/tracking.py
playground/whole_process.py
src/cut_detector/__init__.py
src/cut_detector/_version.py
src/cut_detector/_widget.py
src/cut_detector/napari.yaml
src/cut_detector.egg-info/PKG-INFO
src/cut_detector.egg-info/SOURCES.txt
src/cut_detector.egg-info/dependency_links.txt
src/cut_detector.egg-info/entry_points.txt
src/cut_detector.egg-info/requires.txt
src/cut_detector.egg-info/top_level.txt
src/cut_detector/_tests/__init__.py
src/cut_detector/_tests/test_annotations_upload.py
src/cut_detector/_tests/test_functions.py
src/cut_detector/_tests/test_micro_tubules_cut_detection.py
src/cut_detector/_tests/test_mid_body_detection.py
src/cut_detector/_tests/test_results_saving.py
src/cut_detector/_tests/test_segmentation_tracking.py
src/cut_detector/_tests/test_track_generation.py
src/cut_detector/_tests/test_whole_process.py
src/cut_detector/constants/__init__.py
src/cut_detector/constants/annotations.py
src/cut_detector/constants/tracking.py
src/cut_detector/data/__init__.py
src/cut_detector/data/tools.py
src/cut_detector/factories/__init__.py
src/cut_detector/factories/mid_body_detection_factory.py
src/cut_detector/factories/mitosis_track_generation_factory.py
src/cut_detector/factories/mt_cut_detection_factory.py
src/cut_detector/factories/results_saving_factory.py
src/cut_detector/factories/segmentation_tracking_factory.py
src/cut_detector/models/__init__.py
src/cut_detector/models/tools.py
src/cut_detector/utils/__init__.py
src/cut_detector/utils/box_dimensions.py
src/cut_detector/utils/box_dimensions_contour.py
src/cut_detector/utils/cell_spot.py
src/cut_detector/utils/cell_track.py
src/cut_detector/utils/cnn_data_set.py
src/cut_detector/utils/hidden_markov_models.py
src/cut_detector/utils/image_tools.py
src/cut_detector/utils/metaphase_sequence.py
src/cut_detector/utils/mid_body_spot.py
src/cut_detector/utils/mid_body_track.py
src/cut_detector/utils/mitosis_track.py
src/cut_detector/utils/spot.py
src/cut_detector/utils/tools.py
src/cut_detector/utils/track.py
src/cut_detector/utils/track_generation.py
src/cut_detector/utils/mid_body_detection/__init__.py
src/cut_detector/utils/mid_body_detection/detection.py
src/cut_detector/utils/mid_body_detection/spatial_laptrack.py
src/cut_detector/utils/mid_body_detection/tracking.py
src/cut_detector/utils/mitosis_track_generation/__init__.py
src/cut_detector/utils/mitosis_track_generation/metaphase_cnn_data_set.py
src/cut_detector/utils/mitosis_track_generation/metaphase_cnn_model.py
src/cut_detector/utils/mitosis_track_generation/metaphase_cnn_model_params.py
src/cut_detector/utils/mt_cut_detection/__init__.py
src/cut_detector/utils/mt_cut_detection/bridges_mt_cnn_model_params.py
src/cut_detector/utils/mt_cut_detection/bridges_mt_model_manager.py
src/cut_detector/utils/mt_cut_detection/impossible_detection.py
src/cut_detector/utils/mt_cut_detection/micro_tubules_augmentation.py
src/cut_detector/utils/segmentation_tracking/__init__.py
src/cut_detector/utils/segmentation_tracking/mask_utils.py
src/cut_detector/widget_functions/__init__.py
src/cut_detector/widget_functions/mid_body_detection.py
src/cut_detector/widget_functions/mitosis_track_generation.py
src/cut_detector/widget_functions/mt_cut_detection.py
src/cut_detector/widget_functions/save_results.py
src/cut_detector/widget_functions/segmentation_tracking.py