.gitignore
.pre-commit-config.yaml
LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
tox.ini
.github/workflows/test_and_deploy.yml
.napari-hub/DESCRIPTION.md
.napari-hub/config.yml
playground/mid_body_detection.py
playground/mid_body_evaluation.py
playground/mid_body_execution.py
playground/mt_cut_detection.py
playground/napari_layer.py
playground/segmentation.py
playground/tracking.py
src/cut_detector/__init__.py
src/cut_detector/_version.py
src/cut_detector/_widget.py
src/cut_detector/napari.yaml
src/cut_detector.egg-info/PKG-INFO
src/cut_detector.egg-info/SOURCES.txt
src/cut_detector.egg-info/dependency_links.txt
src/cut_detector.egg-info/entry_points.txt
src/cut_detector.egg-info/requires.txt
src/cut_detector.egg-info/top_level.txt
src/cut_detector/_tests/__init__.py
src/cut_detector/_tests/test_annotations_upload.py
src/cut_detector/_tests/test_micro_tubules_cut_detection.py
src/cut_detector/_tests/test_mid_body_detection.py
src/cut_detector/_tests/test_results_saving.py
src/cut_detector/_tests/test_segmentation_tracking.py
src/cut_detector/_tests/test_track_generation.py
src/cut_detector/_tests/test_whole_process.py
src/cut_detector/constants/__init__.py
src/cut_detector/constants/annotations.py
src/cut_detector/constants/tracking.py
src/cut_detector/data/__init__.py
src/cut_detector/data/tools.py
src/cut_detector/factories/__init__.py
src/cut_detector/factories/mid_body_detection_factory.py
src/cut_detector/factories/mt_cut_detection_factory.py
src/cut_detector/factories/results_saving_factory.py
src/cut_detector/factories/segmentation_tracking_factory.py
src/cut_detector/factories/tracks_merging_factory.py
src/cut_detector/models/__init__.py
src/cut_detector/models/tools.py
src/cut_detector/utils/__init__.py
src/cut_detector/utils/box_dimensions.py
src/cut_detector/utils/box_dimensions_dln.py
src/cut_detector/utils/cell_spot.py
src/cut_detector/utils/cell_track.py
src/cut_detector/utils/cnn_data_set.py
src/cut_detector/utils/hidden_markov_models.py
src/cut_detector/utils/image_tools.py
src/cut_detector/utils/mid_body_spot.py
src/cut_detector/utils/mid_body_track.py
src/cut_detector/utils/mitosis_track.py
src/cut_detector/utils/spot.py
src/cut_detector/utils/tools.py
src/cut_detector/utils/track.py
src/cut_detector/utils/trackmate_frame_spots.py
src/cut_detector/utils/trackmate_spot.py
src/cut_detector/utils/trackmate_track.py
src/cut_detector/utils/bridges_classification/__init__.py
src/cut_detector/utils/bridges_classification/bridges_mt_cnn_model_params.py
src/cut_detector/utils/bridges_classification/bridges_mt_model_manager.py
src/cut_detector/utils/bridges_classification/impossible_detection.py
src/cut_detector/utils/bridges_classification/micro_tubules_augmentation.py
src/cut_detector/utils/bridges_classification/template_type.py
src/cut_detector/utils/cell_division_detection/__init__.py
src/cut_detector/utils/cell_division_detection/metaphase_cnn_model_params.py
src/cut_detector/widget_functions/__init__.py
src/cut_detector/widget_functions/mid_body_detection.py
src/cut_detector/widget_functions/mitosis_track_generation.py
src/cut_detector/widget_functions/mt_cut_detection.py
src/cut_detector/widget_functions/save_results.py
src/cut_detector/widget_functions/tracking.py