.gitignore
.pre-commit-config.yaml
.readthedocs.yaml
LICENSE
MANIFEST.in
README.md
codecov.yml
coverage.toml
pyproject.toml
.github/PULL_REQUEST_TEMPLATE.md
.github/workflows/close_jira_ticket.yaml
.github/workflows/create_jira_tickets.sh
.github/workflows/integration_tests.yaml
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.github/workflows/pypipublish.yaml
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ci/environment.yml
ci/environment_hpc.yml
ci/containers/Makefile
ci/containers/README.md
ci/containers/build.sh
ci/containers/entrypoint.sh
ci/containers/all_w_nersc_libs/Containerfile
ci/containers/all_w_nersc_libs/README.md
ci/containers/buildbase/Containerfile
ci/containers/condabase/Containerfile
ci/containers/hdf5/Containerfile
ci/containers/mpi-5.0.7/Containerfile
ci/containers/mpich-4.2.2/Containerfile
ci/containers/netcdf/Containerfile
ci/containers/python/Containerfile
ci/containers/roms/Containerfile
ci/containers/roms-marbl/Containerfile
ci/containers/runner/Containerfile
ci/containers/runner/run.sh
cstar/__init__.py
cstar/simulation.py
cstar/additional_files/env_files/anvil.env
cstar/additional_files/env_files/darwin_arm64.env
cstar/additional_files/env_files/derecho.env
cstar/additional_files/env_files/expanse.env
cstar/additional_files/env_files/linux_aarch64.env
cstar/additional_files/env_files/linux_x86_64.env
cstar/additional_files/env_files/perlmutter.env
cstar/additional_files/lmod_lists/anvil.lmod
cstar/additional_files/lmod_lists/derecho.lmod
cstar/additional_files/lmod_lists/expanse.lmod
cstar/additional_files/lmod_lists/perlmutter.lmod
cstar/additional_files/templates/bp/blueprint.yaml
cstar/additional_files/templates/wp/fanout.yaml
cstar/additional_files/templates/wp/linear.yaml
cstar/additional_files/templates/wp/parallel.yaml
cstar/additional_files/templates/wp/single_step.yaml
cstar/additional_files/templates/wp/workplan.yaml
cstar/additional_files/templates/wp/wp_with_bp_overrides.yaml
cstar/base/__init__.py
cstar/base/additional_code.py
cstar/base/discretization.py
cstar/base/exceptions.py
cstar/base/external_codebase.py
cstar/base/feature.py
cstar/base/gitutils.py
cstar/base/input_dataset.py
cstar/base/log.py
cstar/base/utils.py
cstar/cli/__init__.py
cstar/cli/cli.py
cstar/cli/version.py
cstar/cli/blueprint/__init__.py
cstar/cli/blueprint/check.py
cstar/cli/blueprint/run.py
cstar/cli/template/__init__.py
cstar/cli/template/create.py
cstar/cli/workplan/__init__.py
cstar/cli/workplan/check.py
cstar/cli/workplan/compose.py
cstar/cli/workplan/generate.py
cstar/cli/workplan/plan.py
cstar/cli/workplan/run.py
cstar/cli/workplan/status.py
cstar/entrypoint/__init__.py
cstar/entrypoint/service.py
cstar/entrypoint/worker/__init__.py
cstar/entrypoint/worker/worker.py
cstar/execution/file_system.py
cstar/execution/handler.py
cstar/execution/local_process.py
cstar/execution/scheduler_job.py
cstar/io/constants.py
cstar/io/retriever.py
cstar/io/source_data.py
cstar/io/staged_data.py
cstar/io/stager.py
cstar/marbl/__init__.py
cstar/marbl/external_codebase.py
cstar/orchestration/__init__.py
cstar/orchestration/adapter.py
cstar/orchestration/dag_runner.py
cstar/orchestration/models.py
cstar/orchestration/orchestration.py
cstar/orchestration/serialization.py
cstar/orchestration/transforms.py
cstar/orchestration/utils.py
cstar/orchestration/launch/__init__.py
cstar/orchestration/launch/local.py
cstar/orchestration/launch/slurm.py
cstar/roms/__init__.py
cstar/roms/discretization.py
cstar/roms/external_codebase.py
cstar/roms/input_dataset.py
cstar/roms/runtime_settings.py
cstar/roms/simulation.py
cstar/system/environment.py
cstar/system/manager.py
cstar/system/scheduler.py
cstar/tests/__init__.py
cstar/tests/conftest.py
cstar/tests/integration_tests/__init__.py
cstar/tests/integration_tests/config.py
cstar/tests/integration_tests/conftest.py
cstar/tests/integration_tests/fixtures.py
cstar/tests/integration_tests/test_cstar_test_blueprints.py
cstar/tests/integration_tests/test_fixtures.py
cstar/tests/integration_tests/blueprints/__init__.py
cstar/tests/integration_tests/blueprints/blueprint_complete.yaml
cstar/tests/integration_tests/blueprints/blueprint_template.yaml
cstar/tests/integration_tests/blueprints/fixtures.py
cstar/tests/integration_tests/workplans/test_run_dag.py
cstar/tests/unit_tests/__init__.py
cstar/tests/unit_tests/conftest.py
cstar/tests/unit_tests/fake_abc_subclasses.py
cstar/tests/unit_tests/test_simulation.py
cstar/tests/unit_tests/base/__init__.py
cstar/tests/unit_tests/base/test_additional_code.py
cstar/tests/unit_tests/base/test_discretization.py
cstar/tests/unit_tests/base/test_external_codebase.py
cstar/tests/unit_tests/base/test_gitutils.py
cstar/tests/unit_tests/base/test_input_dataset.py
cstar/tests/unit_tests/base/test_log.py
cstar/tests/unit_tests/base/test_utils.py
cstar/tests/unit_tests/entrypoint/test_service.py
cstar/tests/unit_tests/entrypoint/test_worker.py
cstar/tests/unit_tests/execution/test_file_system.py
cstar/tests/unit_tests/execution/test_handler.py
cstar/tests/unit_tests/execution/test_local_process.py
cstar/tests/unit_tests/execution/test_pbs_job.py
cstar/tests/unit_tests/execution/test_scheduler_job.py
cstar/tests/unit_tests/execution/test_slurm_job.py
cstar/tests/unit_tests/io/test_retriever.py
cstar/tests/unit_tests/io/test_source_data.py
cstar/tests/unit_tests/io/test_staged_data.py
cstar/tests/unit_tests/io/test_stager.py
cstar/tests/unit_tests/marbl/__init__.py
cstar/tests/unit_tests/marbl/test_marbl_external_codebase.py
cstar/tests/unit_tests/orchestration/__init__.py
cstar/tests/unit_tests/orchestration/conftest.py
cstar/tests/unit_tests/orchestration/test_models.py
cstar/tests/unit_tests/orchestration/test_orchestration.py
cstar/tests/unit_tests/orchestration/test_planner.py
cstar/tests/unit_tests/orchestration/test_serialization.py
cstar/tests/unit_tests/orchestration/test_splitting.py
cstar/tests/unit_tests/orchestration/test_transforms.py
cstar/tests/unit_tests/orchestration/test_utils.py
cstar/tests/unit_tests/orchestration/cli/workplan/test_check.py
cstar/tests/unit_tests/orchestration/cli/workplan/test_compose.py
cstar/tests/unit_tests/orchestration/cli/workplan/test_plan.py
cstar/tests/unit_tests/roms/__init__.py
cstar/tests/unit_tests/roms/test_roms_discretization.py
cstar/tests/unit_tests/roms/test_roms_external_codebase.py
cstar/tests/unit_tests/roms/test_roms_input_dataset.py
cstar/tests/unit_tests/roms/test_roms_runtime_settings.py
cstar/tests/unit_tests/roms/test_roms_simulation.py
cstar/tests/unit_tests/roms/fixtures/example_runtime_settings.in
cstar/tests/unit_tests/system/test_context_registry.py
cstar/tests/unit_tests/system/test_context_schedulers.py
cstar/tests/unit_tests/system/test_environment.py
cstar/tests/unit_tests/system/test_hostnameevaluator.py
cstar/tests/unit_tests/system/test_manager.py
cstar/tests/unit_tests/system/test_scheduler.py
cstar_ocean.egg-info/PKG-INFO
cstar_ocean.egg-info/SOURCES.txt
cstar_ocean.egg-info/dependency_links.txt
cstar_ocean.egg-info/entry_points.txt
cstar_ocean.egg-info/requires.txt
cstar_ocean.egg-info/top_level.txt
docs/Makefile
docs/api-blueprint.rst
docs/api-orchestration.rst
docs/api.rst
docs/blueprints.rst
docs/conf.py
docs/configuration.rst
docs/contributing.rst
docs/index.rst
docs/installation.rst
docs/machines.rst
docs/make.bat
docs/python_api_guides.rst
docs/releases.rst
docs/terminology.rst
docs/workplans.rst
docs/_templates/autosummary/class.rst
docs/howto_guides/1_working_with_additionalcode.ipynb
docs/howto_guides/2_working_with_inputdatasets.ipynb
docs/howto_guides/3_working_with_externalcodebases.ipynb
docs/howto_guides/4_running_on_personal_computers.ipynb
docs/howto_guides/5_handling_jobs_on_hpc_systems.ipynb
docs/images/hpc_arch_diagram.png
docs/snippets/in-development.rst
docs/snippets/review-config.rst
docs/tutorials/1_building_a_simulation_and_exporting_it_as_a_blueprint.ipynb
docs/tutorials/2_importing_and_running_a_simulation_from_a_blueprint.ipynb
docs/tutorials/3_restarting_and_continuing_a_simulation.ipynb
examples/cstar_example.py
examples/cstar_example_notebook.ipynb