[ccpem_pipeliner.jobs]
combine_star_files_job = cryoemservices.pipeliner_plugins.combine_star_job:ProcessStarFiles

[console_scripts]
clem.align_and_merge = cryoemservices.cli.clem_align_and_merge:run
clem.lif_to_stack = cryoemservices.cli.clem_lif_to_stack:run
clem.tiff_to_stack = cryoemservices.cli.clem_tiff_to_stack:run
combine_star_files = cryoemservices.pipeliner_plugins.combine_star_files:main
cryoemservices.angular_distribution_plot = cryoemservices.pipeliner_plugins.angular_distribution_plot:run
cryoemservices.angular_efficiency = cryoemservices.pipeliner_plugins.angular_efficiency:run
cryoemservices.dlq_rabbitmq = cryoemservices.cli.dlq_rabbitmq:run
cryoemservices.find_symmetry = cryoemservices.pipeliner_plugins.symmetry_finder:run
cryoemservices.reextract = cryoemservices.pipeliner_plugins.reextract:run
cryoemservices.resubmit_wrapper = cryoemservices.cli.resubmit_wrapper:run
cryoemservices.service = cryoemservices.cli.start_service:run
cryoemservices.wrap = cryoemservices.cli.run_wrapper:run
relipy.link = cryoemservices.cli.project_linker:run

[cryoemservices.services]
BFactor = cryoemservices.services.bfactor_setup:BFactor
CTFFind = cryoemservices.services.ctffind:CTFFind
ClusterSubmission = cryoemservices.services.cluster_submission:ClusterSubmission
CrYOLO = cryoemservices.services.cryolo:CrYOLO
Denoise = cryoemservices.services.denoise:Denoise
DenoiseSlurm = cryoemservices.services.denoise_slurm:DenoiseSlurm
EMISPyB = cryoemservices.services.ispyb_connector:EMISPyB
Extract = cryoemservices.services.extract:Extract
ExtractClass = cryoemservices.services.extract_class:ExtractClass
IceBreaker = cryoemservices.services.icebreaker:IceBreaker
Images = cryoemservices.services.images:Images
MembrainSeg = cryoemservices.services.membrain_seg:MembrainSeg
MotionCorr = cryoemservices.services.motioncorr:MotionCorr
NodeCreator = cryoemservices.services.node_creator:NodeCreator
PostProcess = cryoemservices.services.postprocess:PostProcess
ProcessRecipe = cryoemservices.services.process_recipe:ProcessRecipe
SelectClasses = cryoemservices.services.select_classes:SelectClasses
SelectParticles = cryoemservices.services.select_particles:SelectParticles
TomoAlign = cryoemservices.services.tomo_align:TomoAlign
TomoAlignSlurm = cryoemservices.services.tomo_align_slurm:TomoAlignSlurm

[cryoemservices.services.images.plugins]
mrc_central_slice = cryoemservices.services.images_plugins:mrc_central_slice
mrc_to_apng = cryoemservices.services.images_plugins:mrc_to_apng
mrc_to_jpeg = cryoemservices.services.images_plugins:mrc_to_jpeg
picked_particles = cryoemservices.services.images_plugins:picked_particles
picked_particles_3d_apng = cryoemservices.services.images_plugins:picked_particles_3d_apng
picked_particles_3d_central_slice = cryoemservices.services.images_plugins:picked_particles_3d_central_slice

[cryoemservices.services.process_recipe.filters]
ispyb = cryoemservices.util.process_recipe_tools:ispyb_filter

[cryoemservices.wrappers]
CLEMAlignAndMerge = cryoemservices.wrappers.clem_align_and_merge:AlignAndMergeWrapper
CLEMLIFToStack = cryoemservices.wrappers.clem_process_raw_lifs:LIFToStackWrapper
CLEMTIFFToStack = cryoemservices.wrappers.clem_process_raw_tiffs:TIFFToStackWrapper
Class2D = cryoemservices.wrappers.class2d_wrapper:Class2DWrapper
Class3D = cryoemservices.wrappers.class3d_wrapper:Class3DWrapper
Refine3D = cryoemservices.wrappers.refine3d_wrapper:Refine3DWrapper
