AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
crnt4sbml/__init__.py
crnt4sbml/advanced_deficiency_approach.py
crnt4sbml/bistability_finder.py
crnt4sbml/c_graph.py
crnt4sbml/crnt.py
crnt4sbml/low_deficiency_approach.py
crnt4sbml/mass_conservation_approach.py
crnt4sbml/semi_diffusive_approach.py
crnt4sbml.egg-info/PKG-INFO
crnt4sbml.egg-info/SOURCES.txt
crnt4sbml.egg-info/dependency_links.txt
crnt4sbml.egg-info/entry_points.txt
crnt4sbml.egg-info/not-zip-safe
crnt4sbml.egg-info/requires.txt
crnt4sbml.egg-info/top_level.txt
docs/Makefile
docs/authors.rst
docs/basic_crnt.rst
docs/celldesigner_walkthrough.rst
docs/conf.py
docs/contributing.rst
docs/creating_eq_manifold.rst
docs/deficiency_walkthrough.rst
docs/generating_c_graphs.rst
docs/history.rst
docs/index.rst
docs/injectivity_walkthrough.rst
docs/installation.rst
docs/make.bat
docs/more_examples.rst
docs/numerical_cont.rst
docs/numerical_opt.rst
docs/quickstart.rst
docs/readme.rst
docs/reference.rst
docs/zbibliography.rst
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docs/classes/crnt4sbml.CRNT.rst
docs/classes/crnt4sbml.Cgraph.rst
docs/classes/crnt4sbml.LowDeficiencyApproach.rst
docs/classes/crnt4sbml.MassConservationApproach.rst
docs/classes/crnt4sbml.SemiDiffusiveApproach.rst
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docs/images_for_docs/fig1Aii_c_graph.png
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docs/images_for_docs/figure_1C_closed_cell_designer.png
docs/images_for_docs/figure_1C_open_cell_designer.png
docs/images_for_docs/hervagault_canu_c_graph.png
docs/images_for_docs/hervagault_canu_cd.png
docs/images_for_docs/heterodimer_association_cell_designer.png
docs/images_for_docs/irene2009_c_graph.png
docs/images_for_docs/irene2009_cd.png
docs/images_for_docs/irene2014_c_graph.png
docs/images_for_docs/irene2014_cd.png
docs/images_for_docs/network_graphml.png
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tests/.DS_Store
tests/README.txt
tests/adv_def_app_dev.py
tests/low_def_c_graph_list.pickle
tests/low_def_low_def_list.pickle
tests/mass_con_c_graph_list.pickle
tests/mass_con_list.pickle
tests/mass_con_low_def_list.pickle
tests/semi_diff_c_graph_list.pickle
tests/semi_diff_list.pickle
tests/semi_diff_low_def_list.pickle
tests/test_crnt4sbml.py