numpy
pandas
scipy
perturb-tools>=0.3.0
matplotlib
seaborn>=0.13.0
tqdm
bio
liftover
openpyxl>=3.0.10
papermill>=2.4.0
pyBigWig>=0.3.18
pyro-ppl>=1.8.5
scikit-learn
statsmodels>=0.12.1
ipykernel
pytest-order
nbconvert
logomaker

[model]
pyBigWig
pyro-ppl<=1.8.1
statsmodels
torch<2
