.gitignore
MANIFEST.in
README.md
pyproject.toml
setup.cfg
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bean/plotting/__init__.py
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beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/timestamps.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/timezones.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/timezones.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/tzconversion.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/tzconversion.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/util.pxd
beret_test/lib/python3.8/site-packages/pandas/_libs/tslibs/vectorized.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/window/aggregations.pyx
beret_test/lib/python3.8/site-packages/pandas/_libs/window/indexers.pyx
beret_test/lib/python3.8/site-packages/pandas/io/sas/sas.pyx
beret_test/lib/python3.8/site-packages/scipy/linalg.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize.pxd
beret_test/lib/python3.8/site-packages/scipy/special.pxd
beret_test/lib/python3.8/site-packages/scipy/linalg/cython_blas.pxd
beret_test/lib/python3.8/site-packages/scipy/linalg/cython_lapack.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/cython_optimize.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HConst.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/Highs.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsIO.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsInfo.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsLp.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsLpUtils.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsModelUtils.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsOptions.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsRuntimeOptions.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/HighsStatus.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/SimplexConst.pxd
beret_test/lib/python3.8/site-packages/scipy/optimize/_highs/cython/src/highs_c_api.pxd
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beret_test/lib/python3.8/site-packages/scipy/special/cython_special.pxd
beret_test/lib/python3.8/site-packages/scipy/stats/_biasedurn.pxd
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bin/bean-count
bin/bean-count-samples
bin/bean-filter
bin/bean-qc
bin/bean-run
crispr_bean.egg-info/PKG-INFO
crispr_bean.egg-info/SOURCES.txt
crispr_bean.egg-info/dependency_links.txt
crispr_bean.egg-info/requires.txt
crispr_bean.egg-info/top_level.txt
docs/ReporterScreen_api.ipynb
docs/ReporterScreen_api.rst
docs/editing_pattern_analysis.ipynb
docs/sample_quality_report.ipynb
imgs/anbe.svg
imgs/bean_title.svg
imgs/output_20_2.png
imgs/output_34_1.png
imgs/reporter_construct.svg
imgs/reporter_screen.svg
imgs/screendata.svg
tests/CRISPRessoCount_on_test.h5ad
tests/test_Edit.py
tests/test_count.py
tests/CRISPRessoCount_on_test/CRISPRessoCount_RUNNING_LOG.txt
tests/data/sample_list.csv
tests/data/test_R1.fastq
tests/data/test_R2.fastq
tests/data/test_guide_info.csv