.gitignore
.pre-commit-config.yaml
CHANGELOG.rst
LICENSE
README.rst
conda-environment.yml
pyproject.toml
tox.ini
.github/PULL_REQUEST_TEMPLATE.md
.github/release_checklist.md
.github/workflows/ci.yml
src/cram_archiver/__init__.py
src/cram_archiver/__main__.py
src/cram_archiver/_version.py
src/cram_archiver/_version.pyi
src/cram_archiver/references.py
src/cram_archiver.egg-info/PKG-INFO
src/cram_archiver.egg-info/SOURCES.txt
src/cram_archiver.egg-info/dependency_links.txt
src/cram_archiver.egg-info/entry_points.txt
src/cram_archiver.egg-info/top_level.txt
tests/test_cram_archiver.py
tests/test_references.py
tests/data/GM24385_1.bam
tests/data/NC012920.1.fasta
tests/data/NC012920.1.fasta.fai
tests/data/empty.bam
tests/data/empty.cram
tests/data/ucsc.hg19_nohap.fasta.fai