MANIFEST.in
README.md
pyproject.toml
requirements.txt
setup.cfg
setup.py
CRADLE/__init__.py
CRADLE.egg-info/PKG-INFO
CRADLE.egg-info/SOURCES.txt
CRADLE.egg-info/dependency_links.txt
CRADLE.egg-info/not-zip-safe
CRADLE.egg-info/requires.txt
CRADLE.egg-info/top_level.txt
CRADLE/CallPeak/__init__.py
CRADLE/CallPeak/calculateRC.c
CRADLE/CallPeak/calculateRC.pyx
CRADLE/CallPeak/callPeak.py
CRADLE/CallPeak/vari.py
CRADLE/CorrectBias/__init__.py
CRADLE/CorrectBias/correctBias.py
CRADLE/CorrectBias/covariateUtils.c
CRADLE/CorrectBias/covariateUtils.pyx
CRADLE/CorrectBias/readCounts.c
CRADLE/CorrectBias/readCounts.pyx
CRADLE/CorrectBias/regression.c
CRADLE/CorrectBias/regression.pyx
CRADLE/CorrectBias/taskCovariates.c
CRADLE/CorrectBias/taskCovariates.pyx
CRADLE/CorrectBias/trainCovariates.c
CRADLE/CorrectBias/trainCovariates.pyx
CRADLE/CorrectBias/vari.py
CRADLE/CorrectBiasStored/__init__.py
CRADLE/CorrectBiasStored/correctBias.py
CRADLE/CorrectBiasStored/readCounts.c
CRADLE/CorrectBiasStored/readCounts.pyx
CRADLE/CorrectBiasStored/regression.c
CRADLE/CorrectBiasStored/regression.pyx
CRADLE/CorrectBiasStored/vari.py
CRADLE/Normalize/__init__.py
CRADLE/Normalize/normalize.py
CRADLE/correctbiasutils/__init__.py
CRADLE/correctbiasutils/cython.c
CRADLE/correctbiasutils/cython.pyx
CRADLE/correctbiasutils/vari.py
CRADLE/logging/__init__.py
bin/cradle