LICENSE
README.md
pyproject.toml
setup.py
cpg_gnomad.egg-info/PKG-INFO
cpg_gnomad.egg-info/SOURCES.txt
cpg_gnomad.egg-info/dependency_links.txt
cpg_gnomad.egg-info/requires.txt
cpg_gnomad.egg-info/top_level.txt
gnomad/assessment/__init__.py
gnomad/assessment/sanity_checks.py
gnomad/assessment/summary_stats.py
gnomad/resources/__init__.py
gnomad/resources/config.py
gnomad/resources/import_resources.py
gnomad/resources/resource_utils.py
gnomad/resources/grch37/__init__.py
gnomad/resources/grch37/gnomad.py
gnomad/resources/grch37/gnomad_ld.py
gnomad/resources/grch37/reference_data.py
gnomad/resources/grch38/__init__.py
gnomad/resources/grch38/gnomad.py
gnomad/resources/grch38/reference_data.py
gnomad/sample_qc/__init__.py
gnomad/sample_qc/ancestry.py
gnomad/sample_qc/filtering.py
gnomad/sample_qc/pipeline.py
gnomad/sample_qc/platform.py
gnomad/sample_qc/relatedness.py
gnomad/sample_qc/sex.py
gnomad/utils/__init__.py
gnomad/utils/annotations.py
gnomad/utils/file_utils.py
gnomad/utils/filtering.py
gnomad/utils/gen_stats.py
gnomad/utils/intervals.py
gnomad/utils/liftover.py
gnomad/utils/plotting.py
gnomad/utils/reference_genome.py
gnomad/utils/release.py
gnomad/utils/slack.py
gnomad/utils/sparse_mt.py
gnomad/utils/vcf.py
gnomad/utils/vep.py
gnomad/variant_qc/__init__.py
gnomad/variant_qc/evaluation.py
gnomad/variant_qc/ld.py
gnomad/variant_qc/pipeline.py
gnomad/variant_qc/random_forest.py
gnomad/variant_qc/training.py