---
milestone: v1.3
audited: 2026-02-24T08:00:00Z
status: passed
scores:
  requirements: 10/10
  phases: 2/2
  integration: 6/6
  flows: 2/2
gaps: {}
tech_debt:
  - phase: 10-manual-ruff-leaf-to-hub
    items:
      - "Pre-existing TODO in generators/advanced_rewriter.py:177 — 'TODO: Add timestamp' (provenance generator placeholder). Not introduced by Phase 10."
---

# v1.3 Milestone Audit — Code Quality (Phases 9–10)

**Milestone Goal:** Achieve a clean, zero-error linting baseline — `uv run ruff check .` and `uv run mypy src/` both exit zero, all 281 tests green.

**Audit Scope:** Phases 9–10 (completed phases). Phases 11–12 are pending future execution.

**Audited:** 2026-02-24T08:00:00Z
**Status:** PASSED (for completed phases)

---

## Requirements Coverage

### 3-Source Cross-Reference

| REQ-ID | VERIFICATION.md | SUMMARY Frontmatter | REQUIREMENTS.md | → Final Status |
|--------|-----------------|---------------------|-----------------|----------------|
| CONF-01 | Phase 9: passed | 09-01: listed | `[x]` Complete | **satisfied** |
| CONF-02 | Phase 9: passed | 09-01: listed | `[x]` Complete | **satisfied** |
| CONF-03 | Phase 9: passed | 09-01: listed | `[x]` Complete | **satisfied** |
| CONF-04 | Phase 9: passed | 09-01: listed | `[x]` Complete | **satisfied** |
| RUFF-01 | Phase 9: passed | 09-02: listed | `[x]` Complete | **satisfied** |
| RUFF-02 | Phase 9: passed | 09-02: listed | `[x]` Complete | **satisfied** |
| RUFF-03 | Phase 10: passed | 10-02 + 10-03: listed | `[x]` Complete | **satisfied** |
| RUFF-04 | Phase 10: passed | 10-01: listed | `[x]` Complete | **satisfied** |
| RUFF-05 | Phase 10: passed | 10-01: listed | `[x]` Complete | **satisfied** |
| RUFF-06 | Phase 10: passed | 10-01: listed | `[x]` Complete | **satisfied** |

**Score: 10/10 requirements satisfied**

### Orphan Detection

No orphaned requirements. RUFF-07, MYPY-01–MYPY-06, VALID-01–VALID-03 are assigned to Phases 11–12 (not yet created) — correctly pending, not orphaned.

---

## Phase Verification Summary

| Phase | Status | Score | Key Outcome |
|-------|--------|-------|-------------|
| 09-config-and-auto-fix | ✓ passed | 8/8 | ruff config + 370 auto-fixable violations eliminated |
| 10-manual-ruff-leaf-to-hub | ✓ passed | 8/8 | Zero ruff violations outside cli.py; 281 tests green |

---

## Cross-Phase Integration

| Connection | From → To | Status |
|-----------|-----------|--------|
| CONF-01 → RUFF-03 | Phase 9 per-file-ignores (llm/*.py E501) protects Phase 10's scope decision to skip llm/ | WIRED |
| CONF-03 → scan | extend-exclude for .windsurf/.planning prevents spurious violations in non-source dirs | WIRED |
| CONF-04 → cli.py | B006 suppression for cli.py active, zero B006 reported | WIRED |
| RUFF-01 → RUFF-05/06 | Phase 9 F401 cleanup left all imports needed by Phase 10 renames intact | WIRED |
| RUFF-01 → RUFF-03 | Auto-fix pass left consistent base for Phase 10 structural wrapping | WIRED |
| RUFF-05 → tests | E741 renames (link/lnk/level_val/line) don't break deserialization or test assertions | WIRED |

**Integration score: 6/6 connections wired, 0 issues**

### Notable Finding

`CONF-03` (`extend-exclude`): ruff's `extend-exclude` applies during directory traversal (`ruff check .`) but is bypassed when paths are passed explicitly (`ruff check .windsurf/`). This is documented ruff behaviour. The developer workflow (`uv run ruff check .`) is unaffected.

---

## E2E Flow Verification

**Flow 1: `uv run ruff check .`** → reports exactly 47 violations, all in `cli.py` (E501×45, B023×1, B904×1). Zero violations in any other file. ✓

**Flow 2: `uv run pytest`** → `281 passed in 3.28s`. E741 renames, E402 import move, B017 test fix — all non-breaking. ✓

---

## Tech Debt

| Phase | Item | Severity | Impact |
|-------|------|----------|--------|
| 10-manual-ruff-leaf-to-hub | Pre-existing `TODO: Add timestamp` in `generators/advanced_rewriter.py:177` | Info | Provenance generator uses placeholder string `"timestamp_here"`. Pre-dates Phase 10; not introduced. |

**Total: 1 item across 1 phase — non-blocking**

---

## Pending (Phases 11–12)

The following requirements are pending future phases and are outside this audit's scope:

| REQ-ID | Phase | Description |
|--------|-------|-------------|
| RUFF-07 | 11 | cli.py E501 — 45 long lines to wrap |
| MYPY-01 | 11 | core/database.py zero mypy errors |
| MYPY-02 | 11 | llm/chunked_processor.py zero mypy errors |
| MYPY-03 | 11 | utils/ui.py zero mypy errors |
| MYPY-04 | 11 | extractors/markdown.py zero mypy errors |
| MYPY-05 | 11 | llm/rewriter.py zero mypy errors |
| MYPY-06 | 11 | llm/ollama_client.py, ingest/chunker.py, analyzers/shape.py zero mypy errors |
| VALID-01 | 12 | `uv run ruff check .` exits 0 with zero violations |
| VALID-02 | 12 | `uv run mypy src/` exits 0 with zero errors |
| VALID-03 | 12 | All 281 tests green |

---

## Summary

Phases 9 and 10 of the v1.3 Code Quality milestone are complete and correctly wired. The ruff linting pipeline is clean outside `cli.py`. The 281-test suite is green. All 10 requirements in scope are satisfied with 3-source confirmation.

The milestone is **not yet complete** — Phases 11 (CLI ruff + mypy) and 12 (validation gate) remain. The foundation laid by Phases 9–10 is solid.

---

_Audited: 2026-02-24T08:00:00Z_
_Auditor: Claude (gsd-audit-milestone)_
