LICENSE
README.rst
pyproject.toml
setup.cfg
setup.py
versioneer.py
coralME.egg-info/PKG-INFO
coralME.egg-info/SOURCES.txt
coralME.egg-info/dependency_links.txt
coralME.egg-info/requires.txt
coralME.egg-info/top_level.txt
coralme/__init__.py
coralme/_version.py
coralme/builder/__init__.py
coralme/builder/column_format.json
coralme/builder/compartments.py
coralme/builder/curation.py
coralme/builder/dictionaries.py
coralme/builder/dna_replication.py
coralme/builder/flat_files.py
coralme/builder/formulas.py
coralme/builder/gpr.py
coralme/builder/helper_functions.py
coralme/builder/homology.py
coralme/builder/main.py
coralme/builder/modifications.py
coralme/builder/notes.py
coralme/builder/organism.py
coralme/builder/preprocess_inputs.py
coralme/builder/ribosome.py
coralme/builder/transcription.py
coralme/builder/translation.py
coralme/builder/translocation.py
coralme/builder/trna_charging.py
coralme/builder/troubleshooting.py
coralme/core/__init__.py
coralme/core/component.py
coralme/core/model.py
coralme/core/processdata.py
coralme/core/reaction.py
coralme/iJL1678b-ME/BarEven_subsystem_classification.csv
coralme/iJL1678b-ME/minimal-organism.json
coralme/iJL1678b-ME/building_data/RNAs.txt
coralme/iJL1678b-ME/building_data/TUs.txt
coralme/iJL1678b-ME/building_data/TUs_from_biocyc.txt
coralme/iJL1678b-ME/building_data/amino_acid_trna_synthetase.txt
coralme/iJL1678b-ME/building_data/cleaved_methionine.txt
coralme/iJL1678b-ME/building_data/codon_usage.txt
coralme/iJL1678b-ME/building_data/elongation_subreactions.txt
coralme/iJL1678b-ME/building_data/enzyme_reaction_association.txt
coralme/iJL1678b-ME/building_data/excision_machinery.txt
coralme/iJL1678b-ME/building_data/folding_chaperones.txt
coralme/iJL1678b-ME/building_data/folding_dict.txt
coralme/iJL1678b-ME/building_data/generic_dict.txt
coralme/iJL1678b-ME/building_data/genes.txt
coralme/iJL1678b-ME/building_data/genome.gb
coralme/iJL1678b-ME/building_data/iJO1366b.json
coralme/iJL1678b-ME/building_data/initiation_subreactions.txt
coralme/iJL1678b-ME/building_data/keffs.json
coralme/iJL1678b-ME/building_data/keffs.txt
coralme/iJL1678b-ME/building_data/lipid_modifications.txt
coralme/iJL1678b-ME/building_data/lipoprotein_precursors.txt
coralme/iJL1678b-ME/building_data/m_model.json
coralme/iJL1678b-ME/building_data/m_to_me_mets.txt
coralme/iJL1678b-ME/building_data/me_metabolites.txt
coralme/iJL1678b-ME/building_data/metabolite_corrections.txt
coralme/iJL1678b-ME/building_data/metabolites.txt
coralme/iJL1678b-ME/building_data/modification.txt
coralme/iJL1678b-ME/building_data/orphan_and_spont_reactions.txt
coralme/iJL1678b-ME/building_data/peptide_compartment_and_pathways.txt
coralme/iJL1678b-ME/building_data/peptide_release_factors.txt
coralme/iJL1678b-ME/building_data/post_transcriptional_modification_of_RNA.txt
coralme/iJL1678b-ME/building_data/protein_complexes.txt
coralme/iJL1678b-ME/building_data/protein_corrections.txt
coralme/iJL1678b-ME/building_data/protein_modification.txt
coralme/iJL1678b-ME/building_data/proteins.txt
coralme/iJL1678b-ME/building_data/reaction_corrections.txt
coralme/iJL1678b-ME/building_data/reaction_matrix.txt
coralme/iJL1678b-ME/building_data/reference_tRNAs.fna
coralme/iJL1678b-ME/building_data/rho_independent.txt
coralme/iJL1678b-ME/building_data/ribosomal_proteins.txt
coralme/iJL1678b-ME/building_data/ribosome_subreactions.txt
coralme/iJL1678b-ME/building_data/rna_degradosome.txt
coralme/iJL1678b-ME/building_data/rna_modification.txt
coralme/iJL1678b-ME/building_data/rrna_modifications.txt
coralme/iJL1678b-ME/building_data/sigma_factors.txt
coralme/iJL1678b-ME/building_data/special_modifications.txt
coralme/iJL1678b-ME/building_data/special_trna_subreactions.txt
coralme/iJL1678b-ME/building_data/stable_RNAs.txt
coralme/iJL1678b-ME/building_data/subreaction_matrix.txt
coralme/iJL1678b-ME/building_data/subsystem_classification.txt
coralme/iJL1678b-ME/building_data/termination_subreactions.txt
coralme/iJL1678b-ME/building_data/transcription_subreactions.txt
coralme/iJL1678b-ME/building_data/translocation_multipliers.txt
coralme/iJL1678b-ME/building_data/translocation_pathways.txt
coralme/iJL1678b-ME/building_data/trna_modification.txt
coralme/io/JSONSCHEMA
coralme/io/__init__.py
coralme/io/dict.py
coralme/io/json.py
coralme/io/pickle.py
coralme/licenses/LICENSE-cobrame
coralme/licenses/LICENSE-ecolime
coralme/licenses/LICENSE-solvemepy
coralme/solver/__init__.py
coralme/solver/qmatrixA.cpython-310-x86_64-linux-gnu.so
coralme/solver/qmatrixA.cpython-311-x86_64-linux-gnu.so
coralme/solver/qmatrixA.cpython-312-x86_64-linux-gnu.so
coralme/solver/qmatrixA.cpython-37m-x86_64-linux-gnu.so
coralme/solver/qmatrixA.cpython-38-x86_64-linux-gnu.so
coralme/solver/qmatrixA.cpython-39-x86_64-linux-gnu.so
coralme/solver/qsolveME.cpython-310-x86_64-linux-gnu.so
coralme/solver/qsolveME.cpython-311-x86_64-linux-gnu.so
coralme/solver/qsolveME.cpython-312-x86_64-linux-gnu.so
coralme/solver/qsolveME.cpython-37m-x86_64-linux-gnu.so
coralme/solver/qsolveME.cpython-38-x86_64-linux-gnu.so
coralme/solver/qsolveME.cpython-39-x86_64-linux-gnu.so
coralme/solver/qvaryME.cpython-310-x86_64-linux-gnu.so
coralme/solver/qvaryME.cpython-311-x86_64-linux-gnu.so
coralme/solver/qvaryME.cpython-312-x86_64-linux-gnu.so
coralme/solver/qvaryME.cpython-37m-x86_64-linux-gnu.so
coralme/solver/qvaryME.cpython-38-x86_64-linux-gnu.so
coralme/solver/qvaryME.cpython-39-x86_64-linux-gnu.so
coralme/solver/qwarmLP.cpython-310-x86_64-linux-gnu.so
coralme/solver/qwarmLP.cpython-311-x86_64-linux-gnu.so
coralme/solver/qwarmLP.cpython-312-x86_64-linux-gnu.so
coralme/solver/qwarmLP.cpython-37m-x86_64-linux-gnu.so
coralme/solver/qwarmLP.cpython-38-x86_64-linux-gnu.so
coralme/solver/qwarmLP.cpython-39-x86_64-linux-gnu.so
coralme/solver/solver.py
coralme/solver/warmLP.cpython-310-x86_64-linux-gnu.so
coralme/solver/warmLP.cpython-311-x86_64-linux-gnu.so
coralme/solver/warmLP.cpython-312-x86_64-linux-gnu.so
coralme/solver/warmLP.cpython-37m-x86_64-linux-gnu.so
coralme/solver/warmLP.cpython-38-x86_64-linux-gnu.so
coralme/solver/warmLP.cpython-39-x86_64-linux-gnu.so
coralme/util/__init__.py
coralme/util/building.py
coralme/util/change_model_genes.py
coralme/util/dogma.py
coralme/util/essentiality.py
coralme/util/excel2model.py
coralme/util/flux_analysis.py
coralme/util/massbalance.py
coralme/util/model2excel.py