CHANGES.md
CONTRIBUTING.md
LICENSE
MANIFEST.in
README.md
requirements-dev.txt
requirements.txt
setup.cfg
setup.py
cooler/__init__.py
cooler/__main__.py
cooler/_logging.py
cooler/_version.py
cooler/api.py
cooler/balance.py
cooler/core.py
cooler/fileops.py
cooler/io.py
cooler/reduce.py
cooler/tools.py
cooler/util.py
cooler.egg-info/PKG-INFO
cooler.egg-info/SOURCES.txt
cooler.egg-info/dependency_links.txt
cooler.egg-info/entry_points.txt
cooler.egg-info/not-zip-safe
cooler.egg-info/requires.txt
cooler.egg-info/top_level.txt
cooler/cli/__init__.py
cooler/cli/_util.py
cooler/cli/balance.py
cooler/cli/cload.py
cooler/cli/coarsen.py
cooler/cli/csort.py
cooler/cli/digest.py
cooler/cli/dump.py
cooler/cli/fileops.py
cooler/cli/info.py
cooler/cli/load.py
cooler/cli/makebins.py
cooler/cli/merge.py
cooler/cli/show.py
cooler/cli/zoomify.py
cooler/create/__init__.py
cooler/create/_create.py
cooler/create/_ingest.py
cooler/sandbox/__init__.py
cooler/sandbox/dask.py
docs/Makefile
docs/api.rst
docs/cli.rst
docs/concepts.rst
docs/conf.py
docs/cooler_logo.png
docs/datamodel.rst
docs/glossary.rst
docs/index.rst
docs/make_cli_rst.py
docs/quickstart.rst
docs/releasenotes.md
docs/requirements.txt
docs/schema.rst
docs/schema_v1.rst
docs/schema_v2.rst
docs/schema_v3.rst
tests/_common.py
tests/conftest.py
tests/test_api.py
tests/test_balance.py
tests/test_cli.py
tests/test_cli_export.py
tests/test_cli_fileops.py
tests/test_cli_ingest.py
tests/test_cli_ops.py
tests/test_core.py
tests/test_create.py
tests/test_create_ingest.py
tests/test_create_sanitize.py
tests/test_fileops.py
tests/test_reduce.py
tests/test_show.py
tests/test_tools.py
tests/test_util.py
tests/data/aag2.chrom.sizes
tests/data/aag2.sample1.pairs
tests/data/dec2_20_pluslig_1pGene_grch38_UBR4_D_1nt.pairwise.sorted.cool
tests/data/hg19.GM12878-MboI.matrix.2000kb.bg2.gz
tests/data/hg19.GM12878-MboI.matrix.2000kb.coo.txt
tests/data/hg19.GM12878-MboI.matrix.2000kb.cool
tests/data/hg19.GM12878-MboI.pairs.subsample.blksrt.txt.gz
tests/data/hg19.GM12878-MboI.pairs.subsample.blksrt.txt.gz.px2
tests/data/hg19.GM12878-MboI.pairs.subsample.sorted.txt.gz
tests/data/hg19.GM12878-MboI.pairs.subsample.sorted.txt.gz.tbi
tests/data/hg19.IMR90-MboI.matrix.2000kb.npy
tests/data/hg19.bins.2000kb.bed.gz
tests/data/hg19.sample1.pairs
tests/data/manycontigs.1.coo
tests/data/manycontigs.1.cool
tests/data/manycontigs.chrom.sizes
tests/data/mm9.sample1.pairs
tests/data/odd.1.coo
tests/data/odd.1.cool
tests/data/odd.4.cool
tests/data/odd.chrom.sizes
tests/data/scool_test_file.scool
tests/data/toy.asymm.16.bg2
tests/data/toy.asymm.16.cool
tests/data/toy.asymm.2.bg2
tests/data/toy.asymm.2.cool
tests/data/toy.asymm.32.bg2
tests/data/toy.asymm.32.cool
tests/data/toy.asymm.4.bg2
tests/data/toy.asymm.4.cool
tests/data/toy.asymm.8.bg2
tests/data/toy.asymm.8.cool
tests/data/toy.bins.8.bed
tests/data/toy.bins.var.bed
tests/data/toy.chrom.sizes
tests/data/toy.fasta
tests/data/toy.fasta.fai
tests/data/toy.pairs
tests/data/toy.symm.upper.1.ob.bg2
tests/data/toy.symm.upper.1.ob.coo
tests/data/toy.symm.upper.1.zb.bg2
tests/data/toy.symm.upper.1.zb.coo
tests/data/toy.symm.upper.2.2x.cool
tests/data/toy.symm.upper.2.bg2
tests/data/toy.symm.upper.2.cool
tests/data/toy.symm.upper.2.mcool
tests/data/toy.symm.upper.4.bg2
tests/data/toy.symm.upper.4.cool
tests/data/toy.symm.upper.var.cool
tests/data/toy.symm.upper.var2x.cool
tests/data/toy_hash.pairs
tests/data/toy_hash.pairs.gz
tests/data/yeast.10kb.cool