#!/usr/bin/env python

from .helper import (  # noqa
    MSE,
    GradientDescentMulti,
    adapt_init_norm_bias,
    adata_to_df_gating,
    append_general,
    apply_convex_hull,
    classify_points,
    create_final_output,
    create_target_df,
    fraction_targets_non_targets,
    fraction_targets_vanilla,
    generate2unit_planes,
    get_candidate_points,
    get_mean_target_value,
    get_new_marker_combo,
    get_normal_v_biases,
    get_nr_hierarch_general,
    get_penalty_distance,
    get_points_to_connect,
    get_relevant_points,
    get_two_points_each_hyperplane,
    heuristic_markers,
    initialize_norm_bias,
    line_intersect,
    make_final_gate,
    marker_greedy_summary,
    metrics_new,
    norm1_normal_vectors,
    normalization,
    normalize_column,
    only_f1,
    penalty_1_99_targets,
    possible_marker_combinations,
    prepare_df,
    preprocess_adata_gating,
    print_results_current_pos_only_f1,
    process_results,
    renorm,
    renorm_gating_dict_hierarchy,
    renorm_hierarchy,
    renormalize_column,
    renormalize_gating_output,
    return_best_marker_combo,
    return_best_marker_combo_single_svm,
    return_best_marker_combo_single_tree,
    return_best_marker_combo_tree,
    return_f1_values,
    sigmoid_s,
    sigmoid_s_torch,
    sum_projections,
    summary_metrics,
    target_summary,
    two_points_hyperplane2D,
    value_halfspace,
)
from .plotting import do_HEAT_non_targets, do_HEAT_targets, do_plot_metrics, do_SCATTER  # noqa
from .simulation import simulate_complete_FACS, simulate_complete_FACS_variable, simulate_FACS_per_population  # noqa
from .tools import (  # noqa
    FIND_GATING_STRATEGY,
    do_adaptive_grid_search,
    do_complete_gating,
    find_2D_gate,
    gating_strategy,
    generate_output,
)
