cython>=3.0
numpy>=2.1
scipy>=1.15
pandas>=2.3.0
pysam>=0.23.3
pybedtools>=0.11.2
PyYAML>=6.0.2

[dev]
pytest
mypy
ruff
build
twine

[docs]
sphinx>=7.3
sphinx-press-theme
myst-parser>=2.0
sphinx-autodoc-typehints>=2.1
sphinx-autobuild>=2025.2
sphinx-copybutton>=0.5.0
sphinxcontrib-bibtex>=2.4.0
