Metadata-Version: 2.1
Name: compartor
Version: 1.1.0
Summary: Automatic moment equation generation for stochastic compartment populations
Home-page: http://github.com/zechnerlab/Compartor
Author: Tobias Pietzsch
Author-email: tobias.pietzsch@gmail.com
License: Simplified BSD License
Platform: UNKNOWN
Requires-Python: >=3
Description-Content-Type: text/markdown
Requires-Dist: sympy (>=1.6)

# Compartor

Compartor is an automatic moment equation generator for stochastic compartment populations:
From a set of provided interaction rules, it derives the associated system of ODEs that describes the population statistics.
Equations can be exported as Python or Julia code.


## Installation

Install with `pip`
```
pip install compartor
```


## Getting started

A tutorial for the usage of Compartor is provided as Jupyter notebooks at https://github.com/zechnerlab/Compartor


## Publications

Compartor is based on the theoretical framework introduced by

Duso, L. and Zechner, C. (2020).
Stochastic reaction networks in dynamic compartment populations.
*Proceedings of the National Academy of Sciences,* **117**(37), 22674–22683 (https://doi.org/10.1073/pnas.2003734117).




