LICENSE
README.md
setup.cfg
setup.py
src/commonnexus/__init__.py
src/commonnexus/__main__.py
src/commonnexus/cli_util.py
src/commonnexus/command.py
src/commonnexus/nexus.py
src/commonnexus/tokenizer.py
src/commonnexus/util.py
src/commonnexus.egg-info/PKG-INFO
src/commonnexus.egg-info/SOURCES.txt
src/commonnexus.egg-info/dependency_links.txt
src/commonnexus.egg-info/entry_points.txt
src/commonnexus.egg-info/not-zip-safe
src/commonnexus.egg-info/requires.txt
src/commonnexus.egg-info/top_level.txt
src/commonnexus/blocks/__init__.py
src/commonnexus/blocks/assumptions.py
src/commonnexus/blocks/base.py
src/commonnexus/blocks/characters.py
src/commonnexus/blocks/codons.py
src/commonnexus/blocks/distances.py
src/commonnexus/blocks/notes.py
src/commonnexus/blocks/sets.py
src/commonnexus/blocks/taxa.py
src/commonnexus/blocks/trees.py
src/commonnexus/blocks/unaligned.py
src/commonnexus/commands/__init__.py
src/commonnexus/commands/characters.py
src/commonnexus/commands/combine.py
src/commonnexus/commands/help.py
src/commonnexus/commands/normalise.py
src/commonnexus/commands/split.py
src/commonnexus/commands/taxa.py
src/commonnexus/commands/trees.py
src/commonnexus/tools/__init__.py
src/commonnexus/tools/combine.py
src/commonnexus/tools/matrix.py
src/commonnexus/tools/normalise.py