Metadata-Version: 2.4
Name: combgc
Version: 0.6.9
Summary: A tool that aggregates, filters and combines the results of BGC prediction tools: antiSMASH, deepBGC, and GECCO.
Author-email: Tom Richtermeier <tom.richtermeier@gmx.de>
Maintainer-email: Tom Richtermeier <tom.richtermeier@gmx.de>, Anan Ibrahim <ananhamido@hotmail.com>
License: MIT License
        
        Copyright (c) 2024 Tom Richtermeier, Jasmin Frangenberg
        
        Permission is hereby granted, free of charge, to any person obtaining a copy
        of this software and associated documentation files (the "Software"), to deal
        in the Software without restriction, including without limitation the rights
        to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
        copies of the Software, and to permit persons to whom the Software is
        furnished to do so, subject to the following conditions:
        
        The above copyright notice and this permission notice shall be included in all
        copies or substantial portions of the Software.
        
        THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
        IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
        FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
        AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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        OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
        SOFTWARE.
Project-URL: Homepage, https://github.com/tomrichtermeier/comBGC-Filter/tree/main
Project-URL: Issues, https://github.com/tomrichtermeier/comBGC-Filter/issues
Project-URL: Source, https://github.com/tomrichtermeier/comBGC-Filter
Keywords: biosynthetic-gene-clusters,bioinformatics,genes,bgc
Classifier: Environment :: Console
Classifier: Development Status :: 4 - Beta
Classifier: Programming Language :: Python :: 3.12
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.8
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: biopython>=1.79
Requires-Dist: pandas>=1.0
Dynamic: license-file

# comBGC: A workflow for parsing, filtering, and merging biosynthetic gene clusters
![comBGC logo](https://i.imgur.com/F0ooHWI.png)  
![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)

**comBGC** is a command-line tool that integrates, filters, and refines biosynthetic gene cluster (BGC) predictions from **deepBGC, GECCO, and antiSMASH**. It ensures that only **high-quality, non-redundant BGCs** are included in the final dataset.

### Key Features
✅ **Combines** results from multiple **BGC prediction tools**  
✅ **Filters out** low-confidence BGCs, ensuring **high-quality output**  
✅ **Merges** overlapping BGCs, keeping the **most comprehensive one**  
✅ **Outputs a structured, non-redundant table** with key details  

📖 Read the full documentation on our [GitHub Wiki →](https://github.com/tomrichtermeier/comBGC-Filter/wiki)
