AUTHORS
COPYING
ChangeLog
LICENSE
MANIFEST.in
Makefile.am
NEWS
README
README.md
benchmarks.py
bootstrap
colibri-core.pc.in
colibricore_alignmodel.pxi
colibricore_classes.pxd
colibricore_indexedpatternmodel.pxi
colibricore_patterndict.pxi
colibricore_patternmodel.pxi
colibricore_patternset.pxi
colibricore_relationmap.pxi
colibricore_unindexedpatternmodel.pxi
colibricore_wrapper.cpp
colibricore_wrapper.in.pyx
configure.ac
pyproject.toml
setup.cfg
setup.py
test.py
unordered_map.pxd
unordered_set.pxd
colibricore.egg-info/PKG-INFO
colibricore.egg-info/SOURCES.txt
colibricore.egg-info/dependency_links.txt
colibricore.egg-info/requires.txt
colibricore.egg-info/top_level.txt
exp/apology.txt
exp/colibri-patternmodeller-test.sh
exp/hamlet.colibri.cls
exp/hamlet.v1.colibri.dat
exp/hamlet.v1.colibri.patternmodel
exp/republic.txt
exp/unigramthreshold.sh
exp/unigramthreshold.txt
include/Makefile.am
include/SpookyV2.h
include/algorithms.h
include/alignmodel.h
include/bz2stream.h
include/classdecoder.h
include/classencoder.h
include/common.h
include/datatypes.h
include/pattern.h
include/patternmodel.h
include/patternstore.h
m4/ax_cxx_compile-stdcxx_11.m4
scripts/Makefile
scripts/Makefile.am
scripts/Makefile.in
scripts/colibri-cooc
scripts/colibri-coverage
scripts/colibri-findpatterns
scripts/colibri-freqlist
scripts/colibri-histogram
scripts/colibri-loglikelihood
scripts/colibri-ngrams
scripts/colibri-ngramstats
scripts/colibri-queryngrams
scripts/colibri-reverseindex
src/Makefile.am
src/SpookyV2.cpp
src/algorithms.cpp
src/benchmarks.cpp
src/classdecode.cpp
src/classdecoder.cpp
src/classencode.cpp
src/classencoder.cpp
src/common.cpp
src/comparemodels.cpp
src/extractngrams.cpp
src/grep.cpp
src/pattern.cpp
src/patternmodel.cpp
src/patternmodeller.cpp
src/test.cpp