MANIFEST.in
README
ez_setup.py
setup.py
cobra/INSTALL
cobra/LICENSE
cobra/__init__.py
cobra/clean.sh
cobra/test_all.py
cobra.egg-info/PKG-INFO
cobra.egg-info/SOURCES.txt
cobra.egg-info/dependency_links.txt
cobra.egg-info/requires.txt
cobra.egg-info/top_level.txt
cobra/core/ArrayBasedModel.py
cobra/core/DictList.py
cobra/core/Formula.py
cobra/core/Gene.py
cobra/core/Metabolite.py
cobra/core/Model.py
cobra/core/Object.py
cobra/core/Reaction.py
cobra/core/Solution.py
cobra/core/__init__.py
cobra/documentation/doctrees/cobra.core.doctree
cobra/documentation/doctrees/cobra.doctree
cobra/documentation/doctrees/cobra.external.doctree
cobra/documentation/doctrees/cobra.flux_analysis.doctree
cobra/documentation/doctrees/cobra.io.doctree
cobra/documentation/doctrees/cobra.manipulation.doctree
cobra/documentation/doctrees/cobra.mlab.doctree
cobra/documentation/doctrees/cobra.solvers.doctree
cobra/documentation/doctrees/cobra.stats.doctree
cobra/documentation/doctrees/cobra.test.doctree
cobra/documentation/doctrees/cobra.topology.doctree
cobra/documentation/doctrees/environment.pickle
cobra/documentation/doctrees/index.doctree
cobra/documentation/doctrees/modules.doctree
cobra/documentation/html/.buildinfo
cobra/documentation/html/cobra.core.html
cobra/documentation/html/cobra.external.html
cobra/documentation/html/cobra.flux_analysis.html
cobra/documentation/html/cobra.html
cobra/documentation/html/cobra.io.html
cobra/documentation/html/cobra.manipulation.html
cobra/documentation/html/cobra.mlab.html
cobra/documentation/html/cobra.solvers.html
cobra/documentation/html/cobra.stats.html
cobra/documentation/html/cobra.test.html
cobra/documentation/html/cobra.topology.html
cobra/documentation/html/genindex.html
cobra/documentation/html/index.html
cobra/documentation/html/modules.html
cobra/documentation/html/objects.inv
cobra/documentation/html/py-modindex.html
cobra/documentation/html/search.html
cobra/documentation/html/searchindex.js
cobra/documentation/html/_modules/index.html
cobra/documentation/html/_modules/cobra/solvers.html
cobra/documentation/html/_modules/cobra/test.html
cobra/documentation/html/_modules/cobra/core/ArrayBasedModel.html
cobra/documentation/html/_modules/cobra/core/DictList.html
cobra/documentation/html/_modules/cobra/core/Formula.html
cobra/documentation/html/_modules/cobra/core/Gene.html
cobra/documentation/html/_modules/cobra/core/Metabolite.html
cobra/documentation/html/_modules/cobra/core/Model.html
cobra/documentation/html/_modules/cobra/core/Object.html
cobra/documentation/html/_modules/cobra/core/Reaction.html
cobra/documentation/html/_modules/cobra/core/Solution.html
cobra/documentation/html/_modules/cobra/external/ppmap.html
cobra/documentation/html/_modules/cobra/flux_analysis/double_deletion.html
cobra/documentation/html/_modules/cobra/flux_analysis/essentiality.html
cobra/documentation/html/_modules/cobra/flux_analysis/moma.html
cobra/documentation/html/_modules/cobra/flux_analysis/objective.html
cobra/documentation/html/_modules/cobra/flux_analysis/single_deletion.html
cobra/documentation/html/_modules/cobra/flux_analysis/variability.html
cobra/documentation/html/_modules/cobra/io/mat.html
cobra/documentation/html/_modules/cobra/io/sbml.html
cobra/documentation/html/_modules/cobra/manipulation/delete.html
cobra/documentation/html/_modules/cobra/manipulation/modify.html
cobra/documentation/html/_modules/cobra/mlab/mlab.html
cobra/documentation/html/_modules/cobra/solvers/glpk_solver.html
cobra/documentation/html/_modules/cobra/solvers/legacy.html
cobra/documentation/html/_modules/cobra/stats/stats.html
cobra/documentation/html/_modules/cobra/test/flux_analysis.html
cobra/documentation/html/_modules/cobra/test/solvers.html
cobra/documentation/html/_modules/cobra/test/unit_tests.html
cobra/documentation/html/_modules/cobra/topology/reporter_metabolites.html
cobra/documentation/html/_sources/cobra.core.txt
cobra/documentation/html/_sources/cobra.external.txt
cobra/documentation/html/_sources/cobra.flux_analysis.txt
cobra/documentation/html/_sources/cobra.io.txt
cobra/documentation/html/_sources/cobra.manipulation.txt
cobra/documentation/html/_sources/cobra.mlab.txt
cobra/documentation/html/_sources/cobra.solvers.txt
cobra/documentation/html/_sources/cobra.stats.txt
cobra/documentation/html/_sources/cobra.test.txt
cobra/documentation/html/_sources/cobra.topology.txt
cobra/documentation/html/_sources/cobra.txt
cobra/documentation/html/_sources/index.txt
cobra/documentation/html/_sources/modules.txt
cobra/documentation/html/_static/ajax-loader.gif
cobra/documentation/html/_static/basic.css
cobra/documentation/html/_static/comment-bright.png
cobra/documentation/html/_static/comment-close.png
cobra/documentation/html/_static/comment.png
cobra/documentation/html/_static/default.css
cobra/documentation/html/_static/doctools.js
cobra/documentation/html/_static/down-pressed.png
cobra/documentation/html/_static/down.png
cobra/documentation/html/_static/file.png
cobra/documentation/html/_static/jquery.js
cobra/documentation/html/_static/minus.png
cobra/documentation/html/_static/plus.png
cobra/documentation/html/_static/pygments.css
cobra/documentation/html/_static/searchtools.js
cobra/documentation/html/_static/sidebar.js
cobra/documentation/html/_static/underscore.js
cobra/documentation/html/_static/up-pressed.png
cobra/documentation/html/_static/up.png
cobra/documentation/html/_static/websupport.js
cobra/examples/01_create_model.py
cobra/examples/02_read_simulate_write.py
cobra/examples/03_single_deletion.py
cobra/examples/04_change_objective.py
cobra/examples/05_add_reactions.py
cobra/examples/06_double_deletion_parallel.py
cobra/examples/07_ice_cream_milp.py
cobra/external/__init__.py
cobra/external/ppmap.py
cobra/flux_analysis/__init__.py
cobra/flux_analysis/double_deletion.py
cobra/flux_analysis/essentiality.py
cobra/flux_analysis/moma.py
cobra/flux_analysis/objective.py
cobra/flux_analysis/single_deletion.py
cobra/flux_analysis/variability.py
cobra/io/__init__.py
cobra/io/mat.py
cobra/io/sbml.py
cobra/manipulation/__init__.py
cobra/manipulation/delete.py
cobra/manipulation/modify.py
cobra/mlab/__init__.py
cobra/mlab/mlab.py
cobra/mlab/matlab_scripts/cell_to_string.m
cobra/mlab/matlab_scripts/create_container.m
cobra/mlab/matlab_scripts/load_mat.m
cobra/mlab/matlab_scripts/save_from_python.m
cobra/solvers/__init__.py
cobra/solvers/cplex_solver.py
cobra/solvers/glpk_solver.py
cobra/solvers/gurobi_solver.py
cobra/solvers/legacy.py
cobra/solvers/parameters.py
cobra/solvers/deprecated/glpk.py
cobra/solvers/deprecated/gurobi.py
cobra/stats/__init__.py
cobra/stats/stats.py
cobra/test/__init__.py
cobra/test/flux_analysis.py
cobra/test/parallel.py
cobra/test/solvers.py
cobra/test/unit_tests.py
cobra/test/data/iJO1366.mat
cobra/test/data/iJO1366.pickle
cobra/test/data/iJO1366.xml
cobra/test/data/salmonella.pickle
cobra/test/data/salmonella.xml
cobra/test/data/salmonella_reaction_p_values.pickle
cobra/topology/__init__.py
cobra/topology/reporter_metabolites.py
documentation/Makefile
documentation/autodoc.bat
documentation/autodoc.sh
documentation/cobra.core.rst
documentation/cobra.external.rst
documentation/cobra.flux_analysis.rst
documentation/cobra.io.rst
documentation/cobra.manipulation.rst
documentation/cobra.mlab.rst
documentation/cobra.rst
documentation/cobra.solvers.rst
documentation/cobra.stats.rst
documentation/cobra.test.rst
documentation/cobra.topology.rst
documentation/conf.py
documentation/index.rst
documentation/make.bat
documentation/modules.rst