Metadata-Version: 1.1
Name: cobamp
Version: 0.0.1
Summary: cobamp - pathway analysis methods for genome-scale metabolic models
Home-page: https://github.com/skapur/pyCoBAMP
Author: Vítor Vieira
Author-email: vvieira@ceb.uminho.pt
License: GNU General Public License v3.0
Description: |License| |PyPI version|
        
        pyCoBAMP
        ============
        
        *pyCoBAMP* (Constraint-Based Analysis of Metabolic Pathways) is a Python package containing pathway analysis methods
        for use with constraint-based metabolic models. The main purpose is to provide a framework that is both modular and
        flexible enough to be integrated in other packages (such as cobrapy, framed or cameo) that already implement generic
        data structures for metabolic models.
        
        A (MI)LP solver is required for most of the methods. Current methods are implemented using CPLEX as a solver,
        although future versions will use a unifying solver platform, such as optlang.
        
        Current methods include:
           -  Elementary flux modes: K-Shortest algorithm
           -  Minimal cut sets: MCSEnumerator approach
           -  Elementary flux patterns: K-Shortest algorithm
        
        
        Documentation
        ~~~~~~~~~~~~~
        
        
        
        Instalation from PyPI (stable releases)
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        
        ::
        
            pip install cobamp
        
        Instalation from github (latest development release)
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        
        ::
        
            pip install https://github.com/skapur/pyCoBAMP/archive/master.zip
        
        Credits and License
        ~~~~~~~~~~~~~~~~~~~
        
        Developed at the Centre of Biological Engineering, University of Minho
        
        Released under the GNU Public License (version 3.0).
        
        
        .. |License| image:: https://img.shields.io/badge/license-GPL%20v3.0-blue.svg
           :target: https://opensource.org/licenses/GPL-3.0
        .. |PyPI version| image:: https://badge.fury.io/py/pyCoBAMP.svg
           :target: https://badge.fury.io/py/pyCoBAMP
        
Keywords: pathway analysis metabolic model
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Intended Audience :: Science/Research
Classifier: Programming Language :: Python :: 3.6
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Topic :: Software Development :: Libraries :: Python Modules
