Metadata-Version: 2.1
Name: CNVpytor
Version: 1.0a4
Summary: Python extension of CNVnator
Home-page: https://github.com/abyzovlab/CNVpytor
Author: Milovan Suvakov, Abyzov Lab, Mayo Clinic
Author-email: suvakov@gmail.com
License: UNKNOWN
Description: ![CNVpytor Logo](https://raw.githubusercontent.com/abyzovlab/CNVpytor/master/cnvpytor/imgs/cnvpytor_w_640.png)
        
        # CNVpytor - a python extension of CNVnator
        
        CNVpytor is a Python package and command line tool for CNV analysis from depth-of-coverage by mapped reads developed in Abyzov Lab, Mayo Clinic.
        
        **CNVpytor project is in early development stage.**
        
        Source::
            https://github.com/abyzovlab/CNVpytor
        
        Bug reports::
            https://github.com/abyzovlab/CNVpytor/issues
        
        API documentation:
            https://abyzovlab.github.io/CNVpytor/
        
        ## Dependencies
        
        * gnureadline
        * requests
        * pysam
        * numpy
        * scipy
        * matplotlib
        * h5py >= 2.9
        
        Optional:
        
        * ROOT - for CNVnator root import/export functionality
        * seaborn - for additional plotting styles 
        
        ## Install
        
        ```
        > pip install cnvpytor
        > cnvpytor -download
        ```
        
        ## Using
        
        Check [CNVpytor github page](https://github.com/abyzovlab/CNVpytor).
        
        ## License
        
        Released under MIT licence.
        
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Description-Content-Type: text/markdown
