Metadata-Version: 2.1
Name: cmsip
Version: 0.0.2.3
Summary: UNKNOWN
Home-page: https://github.com/lijinbio/cmsip
Author: Jin Li
Author-email: lijin.abc@gmail.com
License: License :: OSI Approved :: MIT License
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3.6
Description-Content-Type: text/markdown
Requires-Dist: pyyaml
Requires-Dist: matplotlib
Requires-Dist: pandas

# CMSIP: Hydroxymethylation anlaysis of CMS-IP data

A scalable, accurate, and efficient solution for hydroxymethylation analysis of CMS-IP sequencing data.

Source URL: [https://github.com/lijinbio/cmsip](https://github.com/lijinbio/cmsip)

![Workflow of CMSIP.](cmsip_flowchart.png)

## Installation

CMSIP has been deployed in Bioconda at https://anaconda.org/bioconda/cmsip. It is encouraged to install CMSIP from Bioconda, and the following channels should be added. Namely,

```
conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge
conda install cmsip
```

## Example configuration file

An example configuration is [`cms.yaml`](https://github.com/lijinbio/cmsip/blob/master/cms.yaml) under the root of this repository.




