.gitignore
LICENSE
README.md
TODO.md
pyproject.toml
archive/hgx2gcfs.py
archive/hgx2hlgs.py
cloci/main.py
cloci.egg-info/PKG-INFO
cloci.egg-info/SOURCES.txt
cloci.egg-info/dependency_links.txt
cloci.egg-info/entry_points.txt
cloci.egg-info/requires.txt
cloci.egg-info/top_level.txt
cloci/archive/cloci2summary.py
cloci/archive/dnds_calc.py
cloci/archive/hg2hg_net.py
cloci/lib/__init__.py
cloci/lib/evo_conco.py
cloci/lib/generate_nulls.py
cloci/lib/hgp2hgx.py
cloci/lib/hgx2hlgs.py
cloci/lib/input_parsing.py
cloci/lib/output_data.py
cloci/lib/treecalcs.py
cloci/tools/__init__.py
cloci/tools/cloci2annotate.py
cloci/tools/cloci2enrich.py
cloci/tools/cloci2stats.py
cloci/tools/hg2hg_net.py
cloci/tools/hlg2biofile.py
cloci/tools/hlg2hlg_net.py
etc/boundaries.png
etc/pipeline.png
etc/recovery.png