Metadata-Version: 1.1
Name: clinical_research_study_manager
Version: 1.2.8.dev1
Summary: Program to manage some common clinical research tasks from the command line
Home-page: https://github.com/SethPitts/clinical_research_study_manager
Author: Seth Pitts
Author-email: sethpitts22@gmail.com
License: MIT
Description: Clinical Research Study Manager
        ===============================
        
        Program to manage some common clinical research task from the command. Very much a work in progress
        line
        
        Getting Started
        ---------------
        
        This program requires python 3 and a few external packages. Strongly advise installing into a virtual environment as I'm
        new at this!
        
        Prerequisites
        ~~~~~~~~~~~~~
        
        Requires python and above
        
        ::
        
            $ python 3.5
        
        
            $ pip install openpyxl
            $ pip install xlrd
            $ pip install pandas
            $ pip install numpy
            $ pip install matplotlib
        
        Installing
        ~~~~~~~~~~
        
        ::
        
            $ pip install clinical_research_study_manager
        
        Get Help
        
        ::
        
            $ clinical_research_study_manager -h
            optional arguments:
              -h, --help            show this help message and exit
              -create_project Project_Name
                                    Creates a new project titled Project_Name in the
                                    Projects directory
              -load_project Project_Name
                                    Loads Project Project_Name from the Projects directory
                                    for study activities
              -list_projects        List available projects to load
        
        Create New Project
        
        ::
        
            $ clinical_reseaerch_study_manager -create_project Testing
            Creating new project titled Testing
            Created patient_data[phi] for project Testing at /home/beliefs22/Clinical_Research_Manager_Projects/Projects/Testing
            Created patient_data[de_identified] for project Testing at /home/beliefs22/Clinical_Research_Manager_Projects/Projects/Testing
            Created logs for project Testing at /home/beliefs22/Clinical_Research_Manager_Projects/Projects/Testing
            Created logs/logs_with_phi for project Testing at /home/beliefs22/Clinical_Research_Manager_Projects/Projects/Testing
            Created data_visualization for project Testing at /home/beliefs22/Clinical_Research_Manager_Projects/Projects/Testing
            Created log files for project Testing
            Created Screening_Log.xlsx log for Testing at /home/beliefs22/Clinical_Research_Manager_Projects/Projects/Testing/logs/Screening_Log.xlsx
            Created Master_Linking_Log.xlsx log for Testing at /home/beliefs22/Clinical_Research_Manager_Projects/Projects/Testing/logs/logs_with_phi/Master_Linking_Log.xlsx
            Created Follow_Up_Log.xlsx log for Testing at /home/beliefs22/Clinical_Research_Manager_Projects/Projects/Testing/logs/Follow_Up_Log.xlsx
            Created Enrollment_Log.xlsx log for Testing at /home/beliefs22/Clinical_Research_Manager_Projects/Projects/Testing/logs/Enrollment_Log.xl
        
        Load Specific Project
        
        ::
        
        
            $ clinical_research_study_manager -load_project Testing
            Opening Testing
            1. Manage Logs
            2. Query Logs
            Please choose what actions you would like to take, q to quit.
        
        List Available Projects
        
        ::
        
            $ clinical_research_study_manager -list_projects
            Current Projects are:
            1 : Testing
        
        Running the tests
        -----------------
        
        ::
        
            $ clinical_research_study_manager_tests
            Launching unittests with arguments python -m unittest /home/beliefs22/PycharmProjects/clinical_research_study_manager/build/lib/clinical_research_study_manager/tests/testing_input_types.py in /home/beliefs22/PycharmProjects/clinical_research_study_manager/build/lib/clinical_research_study_manager/tests
            testing invalid age input
            testing invalid date input
            testing invalid eligibility status input
            testing invalid enrollment status input
            testing invalid sex input
            testing invalid time input
        
            testing valid age input
            testing valid date input
            testing valid eligibility status input
            testing valid enrollment status input
            testing valid initials input
            testing valid reason ineligible input
            testing valid reason not enrolled input
            testing valid sex input
            testing valid time input
        
            Ran 15 tests in 0.022s
        
            OK
        
        These test will check valid and invalid input expected from the user
        
        Authors
        -------
        
        **Seth Pitts**
        
        License
        -------
        
        This project is licensed under the MIT License - see the `LICENSE.txt`_
        file for details
        
        .. _LICENSE.txt: LICENSE.txt
Keywords: clinical research data management
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: Topic :: Software Development
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
