MANIFEST.in
README.md
setup.py
bin/clease
clease/__init__.py
clease/atoms_manager.py
clease/basis_function.py
clease/bayesian_compressive_sensing.py
clease/cleaselogger.py
clease/cluster.py
clease/cluster_extractor.py
clease/cluster_fingerprint.py
clease/cluster_info_mapper.py
clease/cluster_list.py
clease/concentration.py
clease/convexhull.py
clease/corrFunc.py
clease/evaluate.py
clease/ga_fit.py
clease/interactive_plot.py
clease/mp_logger.py
clease/name_clusters.py
clease/newStruct.py
clease/regression.py
clease/settings.py
clease/settings_bulk.py
clease/structure_generator.py
clease/template_atoms.py
clease/template_filters.py
clease/tools.py
clease/trans_matrix_constructor.py
clease.egg-info/PKG-INFO
clease.egg-info/SOURCES.txt
clease.egg-info/dependency_links.txt
clease.egg-info/requires.txt
clease.egg-info/top_level.txt
clease/calculator/__init__.py
clease/calculator/clease.py
clease/calculator/util.py
clease/gui/__init__.py
clease/gui/cleaseGUI.py
clease/gui/concentrationPage.py
clease/gui/constants.py
clease/gui/fitPage.py
clease/gui/fittingAlgorithmEditors.py
clease/gui/help_message_popup.py
clease/gui/load_save_dialog.py
clease/gui/mc_page.py
clease/gui/mc_runner.py
clease/gui/newStructPage.py
clease/gui/reconfigDB.py
clease/gui/settingInitializer.py
clease/gui/settingsPage.py
clease/gui/util.py
clease/gui/layout/actionbar.kv
clease/gui/layout/bcsEditorLayout.kv
clease/gui/layout/cleaseGUILayout.kv
clease/gui/layout/clease_logo.png
clease/gui/layout/concentrationPageLayout.kv
clease/gui/layout/fitLayout.kv
clease/gui/layout/gaEditor.kv
clease/gui/layout/help_message_layout.kv
clease/gui/layout/l2EditorLayout.kv
clease/gui/layout/lassoEditorLayout.kv
clease/gui/layout/mc_page_layout.kv
clease/gui/layout/newStructPageLayout.kv
clease/gui/layout/settingsPageLayout.kv
clease/montecarlo/__init__.py
clease/montecarlo/averager.py
clease/montecarlo/bias_potential.py
clease/montecarlo/exponential_filter.py
clease/montecarlo/montecarlo.py
clease/montecarlo/sgc_montecarlo.py
clease/montecarlo/swap_move_index_tracker.py
clease/montecarlo/constraints/__init__.py
clease/montecarlo/constraints/constrain_element_insert_by_basis.py
clease/montecarlo/constraints/constrain_swap_by_basis.py
clease/montecarlo/constraints/fixed_element.py
clease/montecarlo/constraints/mc_constraint.py
clease/montecarlo/observers/__init__.py
clease/montecarlo/observers/corr_func_observer.py
clease/montecarlo/observers/diffraction_observer.py
clease/montecarlo/observers/energy_evolution_obs.py
clease/montecarlo/observers/energy_plot_updater.py
clease/montecarlo/observers/lowest_energy_observer.py
clease/montecarlo/observers/mc_observer.py
clease/montecarlo/observers/sgc_observer.py
clease/montecarlo/observers/site_order_parameter.py
clease/montecarlo/observers/snapshot_observer.py
cxx/cython/ce_updater.pxd
cxx/cython/clease_cxx.cpp
cxx/cython/clease_cxx.pyx
cxx/cython/pyce_updater.pyx
cxx/include/additional_tools.hpp
cxx/include/additional_tools.tpp
cxx/include/basis_function.hpp
cxx/include/ce_updater.hpp
cxx/include/cf_history_tracker.hpp
cxx/include/cluster.hpp
cxx/include/cluster_list.hpp
cxx/include/duplication_count_tracker.hpp
cxx/include/matrix.hpp
cxx/include/matrix.tpp
cxx/include/named_array.hpp
cxx/include/row_sparse_struct_matrix.hpp
cxx/include/symbols_with_numbers.hpp
cxx/src/additional_tools.cpp
cxx/src/basis_function.cpp
cxx/src/ce_updater.cpp
cxx/src/cf_history_tracker.cpp
cxx/src/cluster.cpp
cxx/src/cluster_list.cpp
cxx/src/named_array.cpp
cxx/src/row_sparse_struct_matrix.cpp
cxx/src/symbols_with_numbers.cpp
doc/source/aucu_concentration.rst
doc/source/aucu_initial_pool.rst
doc/source/aucu_run_calculations.rst
doc/source/aucu_setting.rst
doc/source/ce_aucu.rst
doc/source/clease.rst
doc/source/index.rst
doc/source/montecarlo_sampling.rst