LICENSE
MANIFEST.in
README.md
requirements.txt
setup.py
CLASV/MANIFEST.in
CLASV/README.md
CLASV/VERSION
CLASV/__init__.py
CLASV/benchmark_clasv.py
CLASV/cli.py
CLASV/core.py
CLASV/install_nextclade.py
CLASV/install_seqkit.py
CLASV/pipeline.py
CLASV/predict_lineage.smk
CLASV/requirements.txt
CLASV/setup.py
CLASV.egg-info/PKG-INFO
CLASV.egg-info/SOURCES.txt
CLASV.egg-info/dependency_links.txt
CLASV.egg-info/entry_points.txt
CLASV.egg-info/requires.txt
CLASV.egg-info/top_level.txt
CLASV/__pycache__/__init__.cpython-310.pyc
CLASV/__pycache__/__init__.cpython-311.pyc
CLASV/__pycache__/cli.cpython-310.pyc
CLASV/__pycache__/cli.cpython-311.pyc
CLASV/__pycache__/core.cpython-311.pyc
CLASV/__pycache__/install_nextclade.cpython-310.pyc
CLASV/__pycache__/install_nextclade.cpython-311.pyc
CLASV/__pycache__/install_seqkit.cpython-310.pyc
CLASV/__pycache__/install_seqkit.cpython-311.pyc
CLASV/__pycache__/pipeline.cpython-310.pyc
CLASV/__pycache__/pipeline.cpython-311.pyc
CLASV/config/NC_004296.fasta
CLASV/config/RF_LASV_lineage_n500_aa.joblib
CLASV/config/config.yaml
CLASV/config/configs.yaml
CLASV/raw_data/Adesina_et_al_2023_EMI.csv
CLASV/raw_data/Adesina_et_al_2023_EMI.fasta
CLASV/raw_data/All_LASV_06_07_24.csv
CLASV/raw_data/All_LASV_06_07_24.fasta
CLASV/raw_data/Bangura_et_al_2024_EMI.csv
CLASV/raw_data/Bangura_et_al_2024_EMI.fasta
CLASV/tools/README-benchmark.md
CLASV/tools/__init__.py
CLASV/tools/benchmark_clasv.py